C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079478 Sssca1 10090 - 19:5728088-5731732 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025885 Sssca1-001 5730303-5731721 protein_coding
  ENSMUST00000159008 Sssca1-005 5730892-5731699 retained_intron
  ENSMUST00000159693 Sssca1-002 5730307-5731732 protein_coding
  ENSMUST00000160141 Sssca1-004 5730307-5731660 retained_intron
  ENSMUST00000160852 Sssca1-006 5728088-5731713 nonsense_mediated_decay
  ENSMUST00000162976 Sssca1-003 5730411-5731475 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000025885ENSMUST00000159008ENSMUST00000160141ENSMUST00000160852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000025885 31.763±5.21 59.695±14.22 24.817±5.18 20.362±0.00 N/A 24.981±4.08 21.546±7.79 23.874±3.76 27.170±12.32 16.407±1.73 52.702±14.78 16.558±6.38 48.169±20.11
ENSMUST00000159008 N/A N/A N/A 5.473±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160141 N/A N/A N/A N/A N/A N/A N/A N/A 16.039±0.00 N/A N/A N/A N/A
ENSMUST00000160852 6.530±0.02 N/A 5.695±1.52 14.189±9.07 3.023±0.00 N/A 2.091±0.00 3.579±0.35 5.974±2.38 1.779±0.25 7.675±5.04 2.832±1.04 0.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069109 sssca1 Sjogren syndrome/scleroderma autoantigen 1 protein_coding Danio_rerio
ENSG00000173465 SSSCA1 Sjogren syndrome/scleroderma autoantigen 1 protein_coding Homo_sapiens

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