C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small Cajal body-specific RNA 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000088789 Scarna13 10090 - 12:105031075-105031349 snoRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000158164 Scarna13-201 105031075-105031349 snoRNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000158164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000158164 18.525±10.39 11.516±1.91 4.182±0.00 9.469±6.32 8.234±2.46 6.911±2.35 6.768±1.44 9.005±2.28 5.984±3.11 9.228±1.43 0.746±0.36 21.088±12.76 2.363±1.99 6.877±3.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0002 VISTA 12:104600832-105202741
CIL_00099M CIL_00099M_0002 VISTA 12:104639330-105240069
CIL_0008Z4 CIL_0008Z4_0002 VISTA 12:104639392-105239908
CIL_0007F2 CIL_0007F2_0002 CGP 12:104929949-105040910

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000083738 SCARNA13 Small Cajal body specific RNA 13 snoRNA Danio_rerio
ENSG00000252481 SCARNA13 small Cajal body-specific RNA 13 snoRNA Homo_sapiens

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