C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selection and upkeep of intraepithelial T cells 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000089773 Skint1 10090 + 4:112006269-112029538 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117379 Skint1-004 112006269-112025640 protein_coding
  ENSMUST00000143802 Skint1-002 112006282-112012345 retained_intron
  ENSMUST00000161389 Skint1-005 112006269-112025640 protein_coding
  ENSMUST00000162158 Skint1-001 112006269-112029538 protein_coding
  ENSMUST00000162885 Skint1-003 112006269-112019406 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungMuscleENSMUST00000161389ENSMUST00000162158ENSMUST00000162885
Transcript ID Breast Lung Muscle
ENSMUST00000161389 N/A N/A 0.037±0.00
ENSMUST00000162158 0.089±0.00 N/A N/A
ENSMUST00000162885 0.225±0.14 0.184±0.09 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XH CIL_0000XH_000B CGP 4:111972923-112029538
CIL_0000XH CIL_0000XH_000G CGP 4:112006269-112168076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016020 ISM membrane
GO:0016021 IEA integral component of membrane
GO:0033089 IMP positive regulation of T cell differentiation in thymus
GO:0045059 IMP positive thymic T cell selection
GO:0045582 IDA positive regulation of T cell differentiation
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004109 CR846080.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000039257 si:ch73-137d22.1 si:ch73-137d22.1 protein_coding Danio_rerio
ENSDARG00000056798 zgc:123297 zgc:123297 protein_coding Danio_rerio
ENSDARG00000079170 zgc:162154 zgc:162154 protein_coding Danio_rerio

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