C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000090828 Sox2ot 10090 + 3:34104438-34682619 sense_overlapping
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000163261 Sox2ot-001 34560381-34677993 sense_overlapping
  ENSMUST00000168995 Sox2ot-003 34638252-34680851 sense_overlapping
  ENSMUST00000170492 Sox2ot-002 34637169-34677993 sense_overlapping
  ENSMUST00000172560 Sox2ot-007 34196751-34638483 sense_overlapping
  ENSMUST00000172673 Sox2ot-012 34560392-34638446 sense_overlapping
  ENSMUST00000172703 Sox2ot-015 34638504-34682619 sense_overlapping
  ENSMUST00000172725 Sox2ot-006 34104438-34638408 sense_overlapping
  ENSMUST00000172935 Sox2ot-010 34560328-34675854 sense_overlapping
  ENSMUST00000173219 Sox2ot-011 34560388-34573862 sense_overlapping
  ENSMUST00000173276 Sox2ot-016 34656437-34676146 sense_overlapping
  ENSMUST00000173365 Sox2ot-013 34589952-34675994 sense_overlapping
  ENSMUST00000173431 Sox2ot-004 34665243-34677995 sense_overlapping
  ENSMUST00000173845 Sox2ot-009 34104458-34676030 sense_overlapping
  ENSMUST00000174087 Sox2ot-005 34638297-34680814 sense_overlapping
  ENSMUST00000174136 Sox2ot-014 34638174-34675897 sense_overlapping
  ENSMUST00000174785 Sox2ot-008 34196864-34508942 sense_overlapping

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163261ENSMUST00000168995ENSMUST00000170492ENSMUST00000172560ENSMUST00000172703ENSMUST00000172725ENSMUST00000172935ENSMUST00000173219ENSMUST00000173276ENSMUST00000173431ENSMUST00000173845ENSMUST00000174136ENSMUST00000174785
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163261 N/A N/A 0.083±0.00 3.647±0.00 N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168995 N/A N/A N/A N/A 0.026±0.02 0.046±0.02 N/A 0.016±0.01 0.003±0.00 0.099±0.01 0.013±0.00 0.068±0.04 0.002±0.00 0.092±0.00
ENSMUST00000170492 N/A N/A 0.248±0.10 14.109±0.23 N/A N/A 0.019±0.00 N/A 0.004±0.00 N/A 0.049±0.01 N/A N/A 0.602±0.33
ENSMUST00000172560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.265±0.00 N/A N/A N/A
ENSMUST00000172703 N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A
ENSMUST00000172725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A N/A N/A
ENSMUST00000172935 N/A N/A N/A N/A N/A 0.214±0.04 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173219 N/A 0.186±0.00 N/A N/A 0.134±0.00 0.197±0.01 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173276 N/A N/A N/A N/A 0.042±0.00 0.164±0.06 0.074±0.00 N/A 0.008±0.00 0.137±0.07 0.020±0.00 0.560±0.34 N/A N/A
ENSMUST00000173431 0.028±0.00 N/A N/A N/A 0.077±0.02 0.074±0.01 0.012±0.00 0.029±0.01 0.012±0.01 0.058±0.02 0.059±0.02 0.139±0.08 0.020±0.01 N/A
ENSMUST00000173845 N/A N/A N/A N/A 0.117±0.05 N/A N/A N/A N/A N/A 0.058±0.00 0.258±0.00 0.020±0.01 N/A
ENSMUST00000174136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 0.370±0.00 N/A N/A
ENSMUST00000174785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0002 VISTA 3:33582396-34183856
CIL_00081O CIL_00081O_0002 VISTA 3:33605209-34206178
CIL_0008UV CIL_0008UV_0002 VISTA 3:33803627-34405807
CIL_0007MF CIL_0007MF_0002 UCNEbase 3:33882710-35464507

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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