C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000091530 Cldn20 10090 + 17:3532554-3533213 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000168560 Cldn20-201 3532554-3533213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168560 0.339±0.17 0.770±0.17 0.459±0.00 0.586±0.21 0.235±0.13 0.601±0.25 0.604±0.25 0.287±0.14 0.327±0.15 0.637±0.40 0.123±0.04 0.735±0.39 0.213±0.03 1.666±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055I CIL_00055I_0002 CGP 17:3326573-3557713
CIL_0002QM CIL_0002QM_0003 CGP 17:3519263-3557713
CIL_00055H CIL_00055H_0002 CGP 17:3532554-3696261

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067725 CLDN20 (1 of 2) claudin 20 protein_coding Danio_rerio
ENSDARG00000077430 CU695076.1 Claudin protein_coding Danio_rerio
ENSG00000171217 CLDN20 claudin 20 protein_coding Homo_sapiens

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