C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: predicted gene 28557
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000100235 RSLCAN18 10090 - 13:67069399-67108604 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091527 RSLCAN18-201 67069400-67097976 protein_coding
  ENSMUST00000109743 RSLCAN18-202 67069400-67097976 protein_coding
  ENSMUST00000185856 RSLCAN18-004 67069399-67097891 processed_transcript
  ENSMUST00000185954 RSLCAN18-003 67073922-67097976 processed_transcript
  ENSMUST00000186303 RSLCAN18-001 67069399-67108549 nonsense_mediated_decay
  ENSMUST00000187652 RSLCAN18-002 67105381-67108604 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091527ENSMUST00000109743ENSMUST00000185856ENSMUST00000186303ENSMUST00000187652
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091527 N/A N/A N/A 0.179±0.00 N/A N/A N/A 0.432±0.00 N/A N/A N/A 0.539±0.21 N/A N/A
ENSMUST00000109743 0.370±0.00 N/A N/A N/A N/A N/A 0.104±0.00 0.337±0.00 0.547±0.20 N/A 0.453±0.12 0.550±0.00 0.240±0.04 N/A
ENSMUST00000185856 N/A N/A N/A 0.518±0.00 0.496±0.00 0.379±0.00 N/A N/A N/A N/A N/A 0.691±0.00 N/A 0.365±0.00
ENSMUST00000186303 0.280±0.04 0.232±0.06 N/A N/A 0.260±0.07 0.216±0.03 0.139±0.01 0.346±0.11 0.572±0.27 0.276±0.00 0.502±0.11 0.340±0.16 0.344±0.25 0.453±0.00
ENSMUST00000187652 1.294±0.49 0.757±0.49 2.467±0.13 0.126±0.00 0.939±0.27 1.109±0.19 0.436±0.13 1.660±0.60 2.550±0.73 1.143±0.13 0.766±0.09 1.340±0.33 1.002±0.06 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0006355 IBA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076108 zgc:194336 zgc:194336 protein_coding Danio_rerio
ENSDARG00000088352 si:ch211-271g18.3 si:ch211-271g18.3 protein_coding Danio_rerio
ENSDARG00000089537 CABZ01079304.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090942 CABZ01054394.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000093134 CR388165.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000096851 si:dkey-111k8.6 si:dkey-111k8.6 protein_coding Danio_rerio

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