C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000101174 Hoxd4 10090 + 2:74711929-74729160 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047904 Hoxd4-201 74721978-74729160 protein_coding
  ENSMUST00000111980 Hoxd4-001 74727074-74729123 protein_coding
  ENSMUST00000144040 Hoxd4-002 74711929-74728868 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000047904ENSMUST00000111980ENSMUST00000144040
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000047904 N/A N/A N/A 0.943±0.00 N/A 0.060±0.00 N/A 0.011±0.00 N/A 0.336±0.06 N/A 0.550±0.00
ENSMUST00000111980 14.007±4.52 27.462±9.08 16.854±0.00 3.281±1.22 5.002±1.12 0.159±0.06 8.861±3.41 0.063±0.04 0.222±0.12 0.536±0.19 25.282±8.47 0.857±0.13
ENSMUST00000144040 10.549±2.31 16.777±6.87 N/A 3.483±0.68 2.956±0.34 N/A 7.880±1.73 0.022±0.00 0.341±0.00 0.561±0.05 9.059±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442
CIL_0006SE CIL_0006SE_0002 CGP 2:74711927-74748442

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059276 hoxd4a homeo box D4a protein_coding Danio_rerio
ENSG00000170166 HOXD4 homeobox D4 protein_coding Homo_sapiens

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