| Expression |
Example |
Description |
| No tag. |
CIL_000001 |
When no tag is specified the query is treated as an accession or gene name |
| SPECIFIC:(tissue) |
SPECIFIC:Heart |
Returns transcripts detected in only one type of tissue. |
| ENRICHED:(tissue) |
ENRICHED:Heart |
Returns transcripts which have increased expression in the given tissue. |
| EXPRESSED:(tissue) |
EXPRESSED:Heart |
Returns transcripts expressed in the given tissue type. |
| FPKMGT:(FPKM) or FPKMGT:(FPKM):(tissue) |
FPKMGT:5 or FPKMGT:5:Heart |
Returns transcripts with expression greater than the given FPKM. If a tissue is passed this will
return transcripts with expression greater than the given FPKM in the given tissue.
|
| FPKMLT:(FPKM) or FPKMLT:(FPKM):(tissue) |
FPKMLT:5 or FPKMLT:5:Heart |
Returns transcripts with expression less than the given FPKM. If a tissue is passed this will
return transcripts with expression less than the given FPKM in the given tissue.
|
| POS:(tax_id):(chromosome):(start)-(end) |
POS:9606:1:914880-969309 |
Returns regions, genes, or transcripts falling withing the given position. |
| BIOTYPE:(biotype) |
BIOTYPE:lincRNA |
Returns regions, genes, or transcripts which contain a transcript annotated as the given biotype. |
| REGIONTYPE:(CGP|UCNEbase|VISTA) |
REGIONTYPE:UCNEbase |
Returns regions which contain the given region type. If searching for genes or transcripts,
genes and transcripts contained within the given region type will be returned.
|
| TAXID:(7955|9606|10090) |
TAXID:7955 |
Returns regions, genes, or transcripts associated with the given taxonomy.
Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse). |
| GO:(GO term accession) |
GO:0005515 |
Returns regions, genes, or transcripts which contain an annotation of the given Gene Ontology (GO) term. |
| Boolean Operators |
|---|
| and |
TAXID:7655 and TAXID:10090 |
Returns accessions existing between two query sets. |
| or |
BIOTYPE:lincRNA or BIOTYPE:antisense |
Returns accessions existing in either of two query sets. |
| not |
not TAXID:9606 |
Returns accessions not in the query. |
| () | BIOTYPE:lincRNA and
(TAXID:7955 and TAXID:10090 and not TAXID:9606) or
(TAXID:9606 and TAXID:7955 and not TAXID:10090) |
Increases the precedence of a query. |
| * |
gata* |
Specifies where to use wildcards in query. Note: wildcards are only supported for tagless searches. |
