C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000001_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000071282-ENSG00000125046 CGP 9606 3:8501707-8745040
GeneTranscriptPositionBiotype
ENSG00000071282 (LMCD1)
LIM and cysteine-rich domains 1 		ENST00000157600 (LMCD1-001) 8501707-8568119 protein_coding
ENST00000397386 (LMCD1-201) 8501807-8568125 protein_coding
ENST00000415597 (LMCD1-004) 8501823-8548863 protein_coding
ENST00000426878 (LMCD1-006) 8537183-8550449 protein_coding
ENST00000454244 (LMCD1-002) 8501858-8567621 protein_coding
ENST00000456506 (LMCD1-003) 8501888-8567764 nonsense_mediated_decay
ENST00000470776 (LMCD1-005) 8501825-8537518 retained_intron
ENST00000535732 (LMCD1-202) 8501807-8551272 protein_coding
ENSG00000182533 (CAV3)
caveolin 3 		ENST00000343849 (CAV3-001) 8733800-8746765 protein_coding
ENST00000397368 (CAV3-002) 8733866-8746756 protein_coding
ENST00000472766 (CAV3-003) 8733836-8841808 processed_transcript
ENSG00000215160 (OR7E122P)
olfactory receptor, family 7, subfamily E, member 122 pseudogene 		ENST00000383606 (OR7E122P-001) 8688143-8689159 unprocessed_pseudogene
ENSG00000224884 (AC034187.2)
 ENST00000437047 (AC034187.2-001) 8573726-8593124 lincRNA
ENSG00000227110 (LMCD1-AS1)
LMCD1 antisense RNA 1 (head to head) 		ENST00000420095 (LMCD1-AS1-001) 8221147-8501655 antisense
ENST00000439407 (LMCD1-AS1-004) 8498609-8611924 antisense
ENST00000441861 (LMCD1-AS1-007) 7952805-8016307 antisense
ENST00000446281 (LMCD1-AS1-006) 7954639-8501598 antisense
ENST00000452802 (LMCD1-AS1-002) 8194249-8501646 antisense
ENST00000455811 (LMCD1-AS1-003) 8498485-8501629 antisense
ENST00000458666 (LMCD1-AS1-005) 8609438-8611900 antisense
ENSG00000237697 (LINC00312)
long intergenic non-protein coding RNA 312 		ENST00000442796 (LINC00312-001) 8571782-8573875 lincRNA
CIL_000001_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057604-ENSMUSG00000034387 CGP 10090 6:112273758-112388023
GeneTranscriptPositionBiotype
ENSMUSG00000034387 (Ssu2)
ssu-2 homolog (C. elegans) 		ENSMUST00000060847 (Ssu2-001) 112359324-112388023 protein_coding
ENSMUST00000123254 (Ssu2-003) 112369275-112375720 retained_intron
ENSMUST00000143134 (Ssu2-002) 112368740-112377727 processed_transcript
ENSMUSG00000044574 (5031434C07Rik)
RIKEN cDNA 5031434C07 gene 		ENSMUST00000053559 (5031434C07Rik-201) 112285857-112288837 antisense
ENSMUST00000188014 (5031434C07Rik-001) 112285593-112288836 antisense
ENSMUSG00000057604 (Lmcd1)
LIM and cysteine-rich domains 1 		ENSMUST00000032376 (Lmcd1-001) 112273758-112330425 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000001_0001ENSG00000071282ENST00000157600ENST00000397386ENST00000415597ENST00000426878ENST00000454244ENST00000456506ENST00000470776ENST00000535732ENSG00000182533ENST00000343849ENST00000397368ENST00000472766ENSG00000215160ENST00000383606ENSG00000224884ENST00000437047ENSG00000227110ENST00000420095ENST00000439407ENST00000441861ENST00000446281ENST00000452802ENST00000455811ENST00000458666ENSG00000237697ENST00000442796CIL_000001_0002ENSMUSG00000034387ENSMUST00000060847ENSMUST00000123254ENSMUST00000143134ENSMUSG00000044574ENSMUST00000053559ENSMUST00000188014ENSMUSG00000057604ENSMUST00000032376
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000001_0001ENSG00000071282ENST00000157600ENST00000397386ENST00000415597ENST00000454244ENST00000456506ENST00000470776ENST00000535732ENSG00000182533ENST00000343849ENST00000397368ENST00000472766ENSG00000215160ENST00000383606ENSG00000224884ENST00000437047ENSG00000227110ENST00000420095ENST00000439407ENST00000441861ENST00000446281ENST00000452802ENST00000455811ENST00000458666ENSG00000237697ENST00000442796CIL_000001_0002ENSMUSG00000034387ENSMUST00000060847ENSMUST00000123254ENSMUST00000143134ENSMUSG00000044574ENSMUST00000053559ENSMUST00000188014ENSMUSG00000057604ENSMUST00000032376
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000071282 ENST00000157600 47.315±0.00 16.708±0.00 1.039±0.00 2.433±1.75 26.176±22.20 6.704±4.10 10.880±0.00 13.371±0.00 5.650±5.50 45.806±34.89 49.832±25.66 16.509±11.55 25.454±8.13 10.648±7.71
ENST00000397386 N/A N/A 1.260±0.00 N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A N/A
ENST00000415597 N/A N/A N/A 0.848±0.00 N/A N/A N/A 0.868±0.00 0.407±0.00 N/A N/A 4.880±0.00 21.992±0.00 1.748±0.00
ENST00000426878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454244 N/A N/A N/A 0.483±0.00 N/A N/A N/A N/A N/A N/A N/A 7.424±0.00 12.943±0.00 3.225±0.00
ENST00000456506 N/A N/A N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A N/A
ENST00000470776 N/A N/A N/A 1.743±0.00 N/A N/A 1.791±0.00 2.016±0.00 N/A N/A N/A N/A N/A N/A
ENST00000535732 N/A N/A N/A N/A N/A 0.651±0.00 0.601±0.00 N/A N/A 15.712±0.00 N/A 1.191±0.00 N/A N/A
ENSG00000182533 ENST00000343849 N/A N/A N/A N/A 2.332±0.00 N/A 5.379±3.42 N/A N/A 0.313±0.16 19.633±2.17 0.040±0.01 N/A 0.626±0.39
ENST00000397368 N/A N/A N/A 0.017±0.00 0.265±0.14 0.252±0.00 N/A N/A N/A 0.309±0.00 6.619±0.00 N/A 0.072±0.04 N/A
ENST00000472766 N/A N/A N/A 0.038±0.00 0.333±0.00 N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.059±0.00 N/A
ENSG00000215160 ENST00000383606 N/A N/A N/A 0.016±0.00 0.044±0.00 N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A 0.342±0.17
ENSG00000224884 ENST00000437047 N/A N/A N/A 0.936±0.00 N/A 0.524±0.00 0.648±0.00 0.589±0.00 0.343±0.00 N/A 0.370±0.00 N/A 0.115±0.00 0.349±0.00
ENSG00000227110 ENST00000420095 N/A 0.032±0.00 N/A N/A 0.115±0.03 0.026±0.00 0.045±0.02 0.135±0.00 0.023±0.01 0.202±0.04 0.161±0.00 0.102±0.02 0.069±0.02 0.113±0.04
ENST00000439407 N/A N/A N/A N/A N/A 0.245±0.00 N/A N/A N/A N/A N/A 0.341±0.07 0.164±0.00 0.140±0.00
ENST00000441861 N/A N/A 0.093±0.00 N/A N/A 0.026±0.01 0.025±0.00 0.078±0.00 N/A N/A N/A 0.082±0.00 0.014±0.00 0.041±0.01
ENST00000446281 0.063±0.00 N/A N/A 0.718±0.00 0.369±0.00 N/A 0.159±0.00 N/A N/A 0.487±0.00 N/A 0.231±0.00 0.065±0.00 0.082±0.00
ENST00000452802 0.120±0.00 N/A 0.100±0.00 N/A 0.265±0.16 N/A 0.106±0.00 0.244±0.00 0.012±0.00 N/A N/A 0.117±0.00 0.029±0.00 0.057±0.01
ENST00000455811 N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A 0.107±0.00 N/A N/A N/A 0.124±0.03 0.178±0.00
ENST00000458666 N/A 0.118±0.00 N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A 0.136±0.00
ENSG00000237697 ENST00000442796 N/A 0.807±0.00 0.150±0.00 N/A 0.577±0.00 0.121±0.01 0.237±0.00 N/A 0.900±0.00 1.424±0.00 0.308±0.00 1.029±0.06 0.541±0.33 0.274±0.22
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034387 ENSMUST00000060847 0.489±0.04 N/A 0.353±0.00 0.012±0.00 0.399±0.23 0.990±0.65 0.289±0.03 0.553±0.07 0.014±0.00 0.249±0.09 0.222±0.07 0.971±0.27 0.169±0.13 0.436±0.12
ENSMUST00000123254 1.349±0.77 21.754±7.03 0.247±0.00 0.092±0.04 0.575±0.15 2.114±0.52 1.093±0.30 0.849±0.18 0.041±0.00 0.414±0.21 0.209±0.19 4.405±1.75 0.472±0.38 0.657±0.34
ENSMUST00000143134 0.377±0.00 6.749±2.31 0.102±0.00 0.036±0.00 0.108±0.00 0.798±0.17 0.348±0.00 0.464±0.02 0.008±0.00 0.268±0.00 0.175±0.04 6.834±3.43 0.232±0.19 0.048±0.00
ENSMUSG00000044574 ENSMUST00000053559 N/A N/A N/A N/A 0.065±0.01 0.028±0.00 0.027±0.00 N/A 0.003±0.00 N/A 0.032±0.02 0.091±0.03 0.013±0.00 0.021±0.02
ENSMUST00000188014 0.104±0.05 0.576±0.17 0.094±0.06 0.013±0.01 0.052±0.02 0.049±0.01 0.063±0.02 0.062±0.01 0.010±0.01 0.155±0.03 N/A 0.311±0.17 0.028±0.02 0.103±0.05
ENSMUSG00000057604 ENSMUST00000032376 6.668±2.65 4.148±0.72 71.371±8.03 2.715±0.24 4.237±2.62 1.213±0.45 8.468±1.01 5.707±0.59 0.349±0.24 6.585±0.07 35.177±4.80 10.017±2.25 6.213±3.26 0.502±0.27

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