C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00003L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123415-ENSG00000094916 CGP 9606 12:54164745-54280133
GeneTranscriptPositionBiotype
ENSG00000094916 (CBX5)
chromobox homolog 5 		ENST00000209875 (CBX5-002) 54230940-54280102 protein_coding
ENST00000439541 (CBX5-004) 54240625-54259592 protein_coding
ENST00000547872 (CBX5-006) 54241747-54252525 retained_intron
ENST00000550411 (CBX5-003) 54241755-54259545 protein_coding
ENST00000552562 (CBX5-005) 54252091-54258427 protein_coding
ENST00000618078 (CBX5-007) 54271841-54280133 processed_transcript
ENSG00000123415 (SMUG1)
single-strand-selective monofunctional uracil-DNA glycosylase 1 		ENST00000243112 (SMUG1-008) 54181471-54188976 protein_coding
ENST00000337581 (SMUG1-005) 54181468-54188974 protein_coding
ENST00000401977 (SMUG1-020) 54181954-54188622 protein_coding
ENST00000503231 (SMUG1-015) 54187214-54188957 processed_transcript
ENST00000503306 (SMUG1-018) 54183695-54188974 protein_coding
ENST00000503447 (SMUG1-009) 54183417-54188992 retained_intron
ENST00000504338 (SMUG1-017) 54182392-54188871 protein_coding
ENST00000504797 (SMUG1-016) 54183654-54188946 protein_coding
ENST00000505128 (SMUG1-007) 54181457-54188972 protein_coding
ENST00000505597 (SMUG1-014) 54186983-54188957 processed_transcript
ENST00000505662 (SMUG1-006) 54181485-54187906 processed_transcript
ENST00000506169 (SMUG1-011) 54183670-54188985 protein_coding
ENST00000506595 (SMUG1-021) 54181453-54188607 protein_coding
ENST00000507904 (SMUG1-010) 54182585-54188990 protein_coding
ENST00000508394 (SMUG1-001) 54181275-54188994 protein_coding
ENST00000509078 (SMUG1-019) 54182558-54184296 retained_intron
ENST00000509864 (SMUG1-022) 54164745-54183933 nonsense_mediated_decay
ENST00000511522 (SMUG1-012) 54182098-54188985 retained_intron
ENST00000511854 (SMUG1-023) 54181453-54182759 retained_intron
ENST00000513838 (SMUG1-003) 54180358-54188957 protein_coding
ENST00000514196 (SMUG1-013) 54182072-54188980 protein_coding
ENST00000514685 (SMUG1-004) 54181453-54188940 protein_coding
ENSG00000241785 (RN7SL390P)
RNA, 7SL, cytoplasmic 390, pseudogene 		ENST00000470634 (RN7SL390P-201) 54255627-54255910 misc_RNA
ENSG00000248576 (RP11-834C11.8)
 ENST00000504210 (RP11-834C11.8-001) 54163139-54168595 antisense
ENSG00000257596 (RP11-968A15.2)
 ENST00000547177 (RP11-968A15.2-001) 54262615-54279063 antisense
ENSG00000258344 (RP11-968A15.8)
 ENST00000553061 (RP11-968A15.8-001) 54276631-54345083 sense_overlapping
CIL_00003L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036061-ENSMUSG00000009575 CGP 10090 15:103153307-103239816
GeneTranscriptPositionBiotype
ENSMUSG00000036061 (Smug1)
single-strand selective monofunctional uracil DNA glycosylase 		ENSMUST00000064067 (Smug1-201) 103153307-103158002 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003L_0001ENSG00000094916ENST00000209875ENST00000439541ENST00000547872ENST00000550411ENST00000552562ENST00000618078ENSG00000123415ENST00000243112ENST00000337581ENST00000401977ENST00000503231ENST00000503306ENST00000503447ENST00000504338ENST00000504797ENST00000505128ENST00000505597ENST00000505662ENST00000506169ENST00000506595ENST00000507904ENST00000508394ENST00000509078ENST00000509864ENST00000511522ENST00000511854ENST00000513838ENST00000514196ENST00000514685ENSG00000241785ENST00000470634ENSG00000248576ENST00000504210ENSG00000257596ENST00000547177ENSG00000258344ENST00000553061CIL_00003L_0002ENSMUSG00000036061ENSMUST00000064067
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003L_0001ENSG00000094916ENST00000209875ENST00000439541ENST00000550411ENSG00000123415ENST00000243112ENST00000337581ENST00000401977ENST00000504797ENST00000505128ENST00000505662ENST00000506595ENST00000507904ENST00000508394ENST00000509864ENST00000511522ENST00000511854ENST00000513838ENSG00000241785ENST00000470634ENSG00000248576ENST00000504210ENSG00000257596ENST00000547177ENSG00000258344ENST00000553061CIL_00003L_0002ENSMUSG00000036061ENSMUST00000064067
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000094916 ENST00000209875 6.182±0.00 5.752±0.00 6.394±0.00 12.372±1.52 5.394±1.40 5.591±1.43 3.090±2.52 10.064±0.00 4.150±2.99 5.234±1.25 1.351±0.61 6.675±6.22 4.489±1.61 9.253±0.87
ENST00000439541 N/A N/A N/A N/A N/A N/A 1.565±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000547872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.288±0.00 N/A 31.420±0.00
ENST00000552562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000123415 ENST00000243112 N/A N/A N/A N/A 2.303±1.83 3.898±0.00 N/A 10.341±0.00 9.670±0.00 N/A N/A 7.098±0.60 11.324±2.55 4.133±0.00
ENST00000337581 2.255±0.00 2.265±0.00 N/A 1.613±0.46 2.769±0.00 1.326±0.00 N/A 3.389±0.00 0.443±0.00 N/A 2.210±0.00 7.021±0.79 8.823±5.34 4.033±0.15
ENST00000401977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.699±0.00 6.150±0.00 N/A 4.122±0.00
ENST00000503231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504797 N/A N/A N/A N/A N/A N/A N/A 1.304±0.00 1.824±0.00 N/A N/A N/A N/A N/A
ENST00000505128 N/A 1.444±0.00 0.327±0.00 N/A 0.950±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505662 2.436±0.00 2.116±0.00 N/A 1.757±0.00 0.427±0.00 2.182±0.00 2.499±0.00 N/A 3.956±0.00 1.805±0.00 N/A N/A N/A N/A
ENST00000506169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506595 N/A N/A N/A N/A N/A N/A 2.927±0.00 N/A N/A 3.463±0.00 N/A 4.862±0.00 N/A N/A
ENST00000507904 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.236±0.00 N/A N/A N/A N/A
ENST00000508394 1.354±0.00 N/A N/A N/A 0.173±0.00 N/A 0.097±0.00 N/A N/A N/A N/A 3.178±0.00 1.547±0.00 2.769±0.00
ENST00000509078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509864 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.770±0.00 N/A N/A N/A N/A
ENST00000511522 N/A N/A 2.131±0.00 2.215±0.00 1.003±0.00 1.160±0.00 1.339±0.00 N/A N/A N/A N/A 2.740±0.00 N/A N/A
ENST00000511854 N/A N/A N/A N/A N/A N/A N/A 1.774±0.00 N/A N/A N/A N/A N/A N/A
ENST00000513838 N/A N/A N/A N/A 0.206±0.00 N/A 0.698±0.00 N/A 0.888±0.00 N/A N/A N/A 1.956±0.00 1.659±0.00
ENST00000514196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241785 ENST00000470634 N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A 0.805±0.00 1.237±0.00 N/A 0.154±0.00
ENSG00000248576 ENST00000504210 0.139±0.00 0.073±0.00 N/A 0.038±0.00 1.400±0.00 0.136±0.00 0.129±0.00 N/A N/A N/A N/A 0.448±0.35 0.151±0.00 0.149±0.02
ENSG00000257596 ENST00000547177 N/A 0.395±0.00 0.105±0.00 0.091±0.00 0.073±0.00 0.260±0.00 0.058±0.00 0.316±0.09 N/A 0.387±0.00 0.097±0.00 0.202±0.02 0.096±0.08 0.555±0.00
ENSG00000258344 ENST00000553061 0.040±0.00 0.519±0.00 N/A 0.020±0.00 0.057±0.00 0.018±0.00 0.110±0.02 0.097±0.00 0.017±0.00 0.732±0.00 0.070±0.00 0.294±0.15 0.086±0.00 0.027±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036061 ENSMUST00000064067 0.671±0.00 1.710±0.54 0.687±0.00 2.525±1.74 2.278±1.70 1.507±0.95 N/A 0.943±0.03 0.901±0.24 1.416±0.00 0.557±0.00 3.415±2.10 3.087±0.80 0.619±0.39

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