C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00004U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198876-ENSG00000165006 CGP 9606 9:34086387-34252523
GeneTranscriptPositionBiotype
ENSG00000165006 (UBAP1)
ubiquitin associated protein 1 		ENST00000297661 (UBAP1-001) 34179013-34252523 protein_coding
ENST00000359544 (UBAP1-002) 34220439-34252522 protein_coding
ENST00000379186 (UBAP1-003) 34179038-34252520 protein_coding
ENSG00000186638 (KIF24)
kinesin family member 24 		ENST00000379166 (KIF24-201) 34252381-34329200 protein_coding
ENST00000379174 (KIF24-003) 34252381-34311371 protein_coding
ENST00000402558 (KIF24-002) 34252381-34311371 protein_coding
ENSG00000198876 (DCAF12)
DDB1 and CUL4 associated factor 12 		ENST00000361264 (DCAF12-001) 34086387-34126773 protein_coding
ENST00000396990 (DCAF12-004) 34098384-34127399 protein_coding
ENST00000450964 (DCAF12-003) 34098488-34125727 protein_coding
ENST00000463286 (DCAF12-002) 34107361-34125703 processed_transcript
ENST00000466402 (DCAF12-005) 34089412-34093779 processed_transcript
ENSG00000224802 (TUBB4BP2)
tubulin, beta 4B class IVb pseudogene 2 		ENST00000454125 (TUBB4BP2-001) 34109171-34109968 processed_pseudogene
ENSG00000227383 (RP11-571F15.2)
 ENST00000439099 (RP11-571F15.2-001) 34191555-34191881 processed_pseudogene
ENSG00000228352 (RP11-537H15.3)
 ENST00000448245 (RP11-537H15.3-002) 34084332-34096225 antisense
ENSG00000233668 (RP11-571F15.3)
 ENST00000372214 (RP11-571F15.3-001) 34223984-34224628 processed_pseudogene
ENSG00000239392 (RP11-537H15.4)
 ENST00000435838 (RP11-537H15.4-001) 34133157-34134696 processed_pseudogene
ENSG00000252164 (RNA5SP282)
RNA, 5S ribosomal pseudogene 282 		ENST00000516355 (RNA5SP282-201) 34206134-34206241 rRNA
ENSG00000279336 (AL353662.2)
 ENST00000625131 (AL353662.2-201) 34201273-34201515 pseudogene
ENSG00000279975 (AL353662.3)
 ENST00000624227 (AL353662.3-201) 34169689-34169936 pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00004U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028436-ENSMUSG00000028437 CGP 10090 4:41291300-41390525
GeneTranscriptPositionBiotype
ENSMUSG00000028436 (Dcaf12)
DDB1 and CUL4 associated factor 12 		ENSMUST00000030145 (Dcaf12-001) 41291300-41314889 protein_coding
ENSMUSG00000028437 (Ubap1)
ubiquitin-associated protein 1 		ENSMUST00000072866 (Ubap1-001) 41348996-41390525 protein_coding
ENSMUST00000108060 (Ubap1-002) 41348996-41389766 protein_coding
ENSMUST00000132235 (Ubap1-004) 41371725-41388692 protein_coding
ENSMUST00000136705 (Ubap1-005) 41349048-41371285 processed_transcript
ENSMUST00000154529 (Ubap1-003) 41371248-41379416 processed_transcript
ENSMUSG00000065873 (n-R5s183)
nuclear encoded rRNA 5S 183 		ENSMUST00000083939 (n-R5s183-201) 41303158-41303272 rRNA
ENSMUSG00000087938 (Gm26049)
predicted gene, 26049 		ENSMUST00000157313 (Gm26049-201) 41312091-41312198 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004U_0001ENSG00000165006ENST00000297661ENST00000359544ENST00000379186ENSG00000186638ENST00000379166ENST00000379174ENST00000402558ENSG00000198876ENST00000361264ENST00000396990ENST00000450964ENST00000463286ENST00000466402ENSG00000224802ENST00000454125ENSG00000227383ENST00000439099ENSG00000228352ENST00000448245ENSG00000233668ENST00000372214ENSG00000239392ENST00000435838ENSG00000252164ENST00000516355ENSG00000279336ENST00000625131ENSG00000279975ENST00000624227CIL_00004U_0002ENSMUSG00000028436ENSMUST00000030145ENSMUSG00000028437ENSMUST00000072866ENSMUST00000108060ENSMUST00000132235ENSMUST00000136705ENSMUST00000154529ENSMUSG00000065873ENSMUST00000083939ENSMUSG00000087938ENSMUST00000157313
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004U_0001ENSG00000165006ENST00000297661ENST00000359544ENST00000379186ENSG00000186638ENST00000379166ENST00000402558ENSG00000198876ENST00000361264ENSG00000224802ENST00000454125ENSG00000227383ENST00000439099ENSG00000228352ENST00000448245ENSG00000233668ENST00000372214ENSG00000239392ENST00000435838ENSG00000252164ENST00000516355ENSG00000279336ENST00000625131ENSG00000279975ENST00000624227CIL_00004U_0002ENSMUSG00000028436ENSMUST00000030145ENSMUSG00000028437ENSMUST00000072866ENSMUST00000108060ENSMUST00000132235ENSMUST00000136705ENSMUSG00000065873ENSMUST00000083939ENSMUSG00000087938ENSMUST00000157313
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165006 ENST00000297661 9.992±0.00 8.646±0.00 2.925±0.00 5.730±4.38 8.043±0.00 8.464±6.30 8.885±8.05 15.779±0.00 3.952±0.96 21.400±19.20 14.418±9.92 16.203±8.14 17.082±2.53 26.311±7.65
ENST00000359544 N/A 6.408±0.00 N/A 0.944±0.00 2.626±0.00 4.615±0.00 N/A 5.331±0.76 3.728±2.82 N/A 10.388±0.00 7.361±0.00 5.231±0.00 N/A
ENST00000379186 N/A N/A N/A 4.226±0.00 1.771±0.00 1.591±0.00 0.716±0.00 N/A N/A 0.618±0.00 N/A 1.619±0.00 N/A N/A
ENSG00000186638 ENST00000379166 N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A N/A N/A 1.062±0.00 N/A 4.053±0.53
ENST00000379174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402558 N/A N/A N/A N/A 0.904±0.00 N/A N/A N/A N/A 0.499±0.00 N/A 2.710±0.00 N/A 13.164±0.00
ENSG00000198876 ENST00000361264 7.277±0.00 5.155±0.00 2.181±0.00 3.504±1.75 6.421±2.00 5.707±1.91 3.283±2.68 6.470±1.66 4.558±0.68 8.738±5.12 4.167±3.79 10.903±3.68 13.113±0.94 35.097±0.52
ENST00000396990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224802 ENST00000454125 N/A 0.255±0.00 N/A 0.052±0.00 0.150±0.12 N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A 0.064±0.00
ENSG00000227383 ENST00000439099 N/A 0.247±0.00 N/A 0.205±0.00 1.554±1.31 N/A 0.092±0.02 N/A 0.243±0.00 0.784±0.75 0.070±0.00 0.289±0.17 0.080±0.00 0.160±0.00
ENSG00000228352 ENST00000448245 0.021±0.00 0.298±0.00 N/A 0.087±0.00 0.042±0.00 0.098±0.02 0.169±0.00 0.021±0.00 0.090±0.00 0.112±0.00 N/A 0.301±0.13 0.065±0.02 0.489±0.30
ENSG00000233668 ENST00000372214 0.147±0.00 0.418±0.00 N/A 0.055±0.00 0.026±0.00 0.295±0.00 0.073±0.00 0.125±0.06 N/A 0.441±0.00 0.234±0.00 0.094±0.04 N/A 0.082±0.01
ENSG00000239392 ENST00000435838 0.014±0.00 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00
ENSG00000252164 ENST00000516355 N/A 0.230±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279336 ENST00000625131 0.568±0.00 0.702±0.00 N/A 0.157±0.00 0.355±0.00 1.242±0.66 0.195±0.00 0.888±0.00 N/A 0.059±0.00 0.659±0.00 1.111±0.00 N/A 0.230±0.10
ENSG00000279975 ENST00000624227 0.687±0.00 2.527±0.00 N/A 2.344±0.00 0.820±0.00 1.156±0.00 0.491±0.00 2.580±0.00 0.989±0.00 2.084±0.00 N/A 4.459±0.00 N/A 1.660±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028436 ENSMUST00000030145 16.832±3.24 17.664±3.41 17.992±1.50 16.811±8.06 17.484±1.02 19.336±3.47 11.851±1.66 15.569±0.39 18.621±10.48 17.669±0.32 10.118±0.48 22.594±3.64 23.196±4.92 23.879±12.49
ENSMUSG00000028437 ENSMUST00000072866 17.486±1.27 16.089±1.26 2.799±0.00 1.870±0.17 13.502±4.72 13.930±5.87 4.782±1.25 15.926±1.05 9.427±2.96 10.237±3.83 5.056±0.98 13.841±6.28 6.975±3.06 17.774±8.61
ENSMUST00000108060 3.610±0.53 N/A 10.579±2.54 10.468±5.68 4.691±1.48 5.605±0.39 5.759±1.53 6.886±0.80 6.640±3.28 2.728±0.30 6.028±1.45 8.202±3.07 14.153±3.68 7.323±1.94
ENSMUST00000132235 N/A N/A N/A 24.462±0.00 N/A N/A N/A N/A N/A N/A N/A 27.428±0.00 54.625±16.73 32.445±0.00
ENSMUST00000136705 N/A 34.261±7.93 N/A N/A N/A N/A N/A N/A 25.526±4.48 N/A N/A N/A N/A N/A
ENSMUST00000154529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065873 ENSMUST00000083939 N/A N/A N/A N/A N/A N/A N/A N/A 2432.995±934.16 N/A N/A 41.771±0.00 32.234±0.00 N/A
ENSMUSG00000087938 ENSMUST00000157313 N/A N/A N/A 37.229±0.00 N/A N/A N/A N/A N/A N/A N/A 53.320±4.45 112.984±46.97 N/A

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