C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00004W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124783-ENSG00000164304 CGP 9606 6:7268306-7389743
GeneTranscriptPositionBiotype
ENSG00000124783 (SSR1)
signal sequence receptor, alpha 		ENST00000244763 (SSR1-001) 7281143-7313207 protein_coding
ENST00000397511 (SSR1-002) 7287570-7313198 protein_coding
ENST00000462112 (SSR1-011) 7296883-7313188 protein_coding
ENST00000474597 (SSR1-003) 7268306-7313207 protein_coding
ENST00000475213 (SSR1-012) 7268938-7289850 processed_transcript
ENST00000479365 (SSR1-007) 7289676-7313182 protein_coding
ENST00000479485 (SSR1-010) 7295056-7301363 protein_coding
ENST00000483409 (SSR1-009) 7301390-7313231 processed_transcript
ENST00000488834 (SSR1-008) 7301333-7347446 processed_transcript
ENST00000489567 (SSR1-006) 7288682-7313174 protein_coding
ENSG00000124784 (RIOK1)
RIO kinase 1 		ENST00000264874 (RIOK1-002) 7396752-7418037 retained_intron
ENST00000379834 (RIOK1-001) 7389496-7418037 protein_coding
ENST00000475351 (RIOK1-003) 7389793-7402848 nonsense_mediated_decay
ENST00000484626 (RIOK1-004) 7403934-7405184 retained_intron
ENST00000493691 (RIOK1-005) 7410378-7411567 retained_intron
ENSG00000219375 (RP11-69L16.3)
 ENST00000404326 (RP11-69L16.3-001) 7331286-7331676 processed_pseudogene
ENSG00000220472 (RP11-69L16.5)
 ENST00000407940 (RP11-69L16.5-001) 7338839-7339568 processed_pseudogene
ENSG00000230570 (RP11-69L16.6)
 ENST00000419672 (RP11-69L16.6-001) 7340854-7342056 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00004W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021427-ENSMUSG00000044566 CGP 10090 13:37971401-38037069
GeneTranscriptPositionBiotype
ENSMUSG00000021427 (Ssr1)
signal sequence receptor, alpha 		ENSMUST00000021864 (Ssr1-201) 37971401-37994190 protein_coding
ENSMUSG00000021428 (Riok1)
RIO kinase 1 (yeast) 		ENSMUST00000021866 (Riok1-201) 38036989-38061433 protein_coding
ENSMUSG00000044566 (Cage1)
cancer antigen 1 		ENSMUST00000074969 (Cage1-201) 38006054-38036937 protein_coding
ENSMUST00000089840 (Cage1-003) 38020911-38037069 protein_coding
ENSMUST00000110233 (Cage1-001) 38006052-38036923 protein_coding
ENSMUST00000131066 (Cage1-002) 38023231-38036937 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004W_0001ENSG00000124783ENST00000244763ENST00000397511ENST00000462112ENST00000474597ENST00000475213ENST00000479365ENST00000479485ENST00000483409ENST00000488834ENST00000489567ENSG00000124784ENST00000264874ENST00000379834ENST00000475351ENST00000484626ENST00000493691ENSG00000219375ENST00000404326ENSG00000220472ENST00000407940ENSG00000230570ENST00000419672CIL_00004W_0002ENSMUSG00000021427ENSMUST00000021864ENSMUSG00000021428ENSMUST00000021866ENSMUSG00000044566ENSMUST00000074969ENSMUST00000089840ENSMUST00000110233ENSMUST00000131066
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004W_0001ENSG00000124783ENST00000244763ENST00000397511ENST00000462112ENST00000479365ENSG00000124784ENST00000264874ENST00000379834ENSG00000219375ENST00000404326ENSG00000220472ENST00000407940ENSG00000230570ENST00000419672CIL_00004W_0002ENSMUSG00000021427ENSMUST00000021864ENSMUSG00000021428ENSMUST00000021866ENSMUSG00000044566ENSMUST00000074969ENSMUST00000089840ENSMUST00000110233
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124783 ENST00000244763 5.198±0.00 7.181±0.00 2.690±0.00 4.868±1.78 4.452±0.30 3.856±0.60 1.980±0.48 5.778±1.72 5.897±2.20 3.846±0.41 1.913±0.00 5.182±2.24 N/A 6.586±0.00
ENST00000397511 17.566±0.00 12.415±0.00 4.928±0.00 7.608±0.00 12.673±7.49 10.106±1.72 6.338±3.75 16.776±3.79 12.891±4.04 12.897±3.91 3.129±2.09 15.142±3.69 17.244±1.65 17.859±0.00
ENST00000462112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.361±0.00 55.100±0.00 78.940±0.00
ENST00000474597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479365 27.163±0.00 N/A N/A N/A 26.575±0.00 15.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124784 ENST00000264874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 N/A N/A N/A
ENST00000379834 N/A 9.723±0.00 N/A N/A N/A 6.568±0.00 N/A N/A N/A N/A 5.861±0.00 10.653±6.27 8.404±1.80 26.693±6.33
ENST00000475351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000219375 ENST00000404326 N/A N/A N/A 0.044±0.00 0.124±0.00 0.038±0.00 0.077±0.00 0.041±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000220472 ENST00000407940 0.138±0.00 0.394±0.00 N/A 0.080±0.00 0.311±0.00 0.117±0.00 0.068±0.00 0.152±0.00 0.023±0.00 0.149±0.00 0.216±0.00 0.495±0.23 0.227±0.15 0.270±0.04
ENSG00000230570 ENST00000419672 N/A N/A N/A N/A N/A 0.049±0.00 0.056±0.00 N/A N/A N/A N/A 0.062±0.00 0.058±0.00 0.032±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021427 ENSMUST00000021864 6.849±1.70 7.500±0.84 10.324±0.18 8.294±2.10 5.053±0.36 6.680±0.61 2.925±0.13 5.692±0.65 8.305±3.01 9.703±0.73 1.898±0.82 9.991±3.02 20.755±5.00 6.168±0.33
ENSMUSG00000021428 ENSMUST00000021866 4.844±1.22 3.654±0.85 7.945±0.84 9.154±0.90 3.330±0.85 4.176±0.62 2.058±0.49 2.715±0.49 5.297±3.68 6.141±1.06 1.823±0.25 6.905±4.43 15.101±6.54 8.683±1.27
ENSMUSG00000044566 ENSMUST00000074969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.992±0.00
ENSMUST00000089840 N/A 0.662±0.05 N/A N/A N/A 0.584±0.00 0.201±0.00 N/A 0.292±0.11 N/A N/A 1.142±0.32 N/A N/A
ENSMUST00000110233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.584±6.54
ENSMUST00000131066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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