C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198326-ENSG00000132635 CGP 9606 20:2816302-2841190
GeneTranscriptPositionBiotype
ENSG00000132635 (PCED1A)
PC-esterase domain containing 1A 		ENST00000356872 (PCED1A-001) 2835314-2841190 protein_coding
ENST00000360652 (PCED1A-003) 2835314-2840692 protein_coding
ENST00000439542 (PCED1A-007) 2838232-2841190 protein_coding
ENST00000448755 (PCED1A-002) 2838232-2840671 protein_coding
ENST00000474714 (PCED1A-004) 2835314-2838366 protein_coding
ENST00000487501 (PCED1A-006) 2835314-2838936 retained_intron
ENSG00000198326 (TMEM239)
transmembrane protein 239 		ENST00000361033 (TMEM239-002) 2816302-2820284 protein_coding
ENST00000380585 (TMEM239-001) 2816333-2817031 protein_coding
ENSG00000241690 (TMEM239)
CDNA FLJ26142 fis, clone TST04526 {ECO:0000313|EMBL:BAC85208.1}; Transmembrane protein 239 {ECO:0000313|Ensembl:ENSP00000369967} 		ENST00000380593 (TMEM239-001) 2814968-2818066 protein_coding
CIL_00006D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049692-ENSMUSG00000037773 CGP 10090 2:130406478-130424701
GeneTranscriptPositionBiotype
ENSMUSG00000027411 (Vps16)
vacuolar protein sorting 16 (yeast) 		ENSMUST00000028900 (Vps16-001) 130424365-130444269 protein_coding
ENSMUST00000125098 (Vps16-008) 130441608-130443399 retained_intron
ENSMUST00000125973 (Vps16-005) 130424339-130438453 retained_intron
ENSMUST00000128994 (Vps16-003) 130424365-130439917 protein_coding
ENSMUST00000130258 (Vps16-002) 130424404-130440296 processed_transcript
ENSMUST00000131220 (Vps16-007) 130439630-130441705 retained_intron
ENSMUST00000132388 (Vps16-004) 130437636-130439067 retained_intron
ENSMUST00000134677 (Vps16-009) 130443167-130443734 retained_intron
ENSMUST00000137084 (Vps16-006) 130440322-130441307 retained_intron
ENSMUSG00000037773 (Pced1a)
PC-esterase domain containing 1A 		ENSMUST00000089581 (Pced1a-001) 130417683-130424278 protein_coding
ENSMUST00000110277 (Pced1a-002) 130418959-130424687 protein_coding
ENSMUST00000123977 (Pced1a-004) 130418201-130424281 processed_transcript
ENSMUST00000131561 (Pced1a-003) 130417247-130424248 processed_transcript
ENSMUST00000141749 (Pced1a-007) 130418970-130424701 retained_intron
ENSMUST00000142536 (Pced1a-006) 130421890-130424310 retained_intron
ENSMUST00000153663 (Pced1a-005) 130418225-130424266 retained_intron
ENSMUSG00000049692 (Tmem239)
transmembrane 239 		ENSMUST00000055421 (Tmem239-001) 130406478-130407902 protein_coding
ENSMUSG00000100963 (RP23-29K12.9)
predicted gene 28372 		ENSMUST00000188900 (RP23-29K12.9-001) 130405239-130408256 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006D_0001ENSG00000132635ENST00000356872ENST00000360652ENST00000439542ENST00000448755ENST00000474714ENST00000487501ENSG00000198326ENST00000361033ENST00000380585ENSG00000241690ENST00000380593CIL_00006D_0002ENSMUSG00000027411ENSMUST00000028900ENSMUST00000125098ENSMUST00000125973ENSMUST00000128994ENSMUST00000130258ENSMUST00000131220ENSMUST00000132388ENSMUST00000134677ENSMUST00000137084ENSMUSG00000037773ENSMUST00000089581ENSMUST00000110277ENSMUST00000123977ENSMUST00000131561ENSMUST00000141749ENSMUST00000142536ENSMUST00000153663ENSMUSG00000049692ENSMUST00000055421ENSMUSG00000100963ENSMUST00000188900
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006D_0001ENSG00000132635ENST00000356872ENST00000360652ENST00000439542ENST00000448755ENST00000474714ENST00000487501ENSG00000198326ENST00000361033ENST00000380585ENSG00000241690ENST00000380593CIL_00006D_0002ENSMUSG00000027411ENSMUST00000028900ENSMUST00000125098ENSMUST00000125973ENSMUST00000130258ENSMUST00000132388ENSMUSG00000037773ENSMUST00000089581ENSMUST00000110277ENSMUST00000142536ENSMUST00000153663ENSMUSG00000049692ENSMUST00000055421ENSMUSG00000100963ENSMUST00000188900
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132635 ENST00000356872 1.985±0.00 5.171±0.00 N/A N/A N/A N/A N/A 2.983±0.00 N/A N/A N/A 3.627±0.00 N/A N/A
ENST00000360652 4.690±0.00 6.710±0.00 N/A 4.749±3.18 6.084±0.00 2.950±2.50 1.498±1.43 8.026±0.00 2.351±1.70 4.619±4.26 0.976±0.00 13.380±7.34 6.705±0.40 7.009±1.24
ENST00000439542 N/A N/A N/A N/A 2.222±0.00 N/A 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000448755 3.811±0.00 7.880±0.00 N/A 5.512±0.00 3.005±2.18 N/A N/A N/A N/A N/A N/A N/A N/A 3.344±0.00
ENST00000474714 N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A 1.256±0.18 13.589±0.00 N/A N/A
ENST00000487501 N/A N/A N/A N/A 1.360±0.00 N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A 5.766±0.00
ENSG00000198326 ENST00000361033 0.014±0.00 N/A N/A N/A 0.026±0.00 0.036±0.00 N/A 0.021±0.00 0.011±0.00 N/A N/A 0.022±0.01 0.026±0.01 N/A
ENST00000380585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.780±10.28
ENSG00000241690 ENST00000380593 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 0.313±0.18 4.959±1.49
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027411 ENSMUST00000028900 8.989±5.96 11.729±0.00 14.410±3.97 23.518±8.25 12.494±2.36 10.855±3.63 6.361±1.25 7.938±2.57 8.159±3.63 6.182±0.00 2.649±1.02 16.934±5.33 8.560±2.89 6.927±0.86
ENSMUST00000125098 N/A N/A 24.772±0.00 37.332±0.00 N/A N/A N/A N/A 40.498±0.00 N/A 6.788±1.55 54.962±3.32 39.035±15.60 N/A
ENSMUST00000125973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.230±5.13 17.418±0.00
ENSMUST00000128994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130258 N/A N/A N/A 34.394±0.00 N/A N/A N/A N/A N/A N/A N/A 38.539±0.00 21.116±0.00 11.430±0.00
ENSMUST00000131220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132388 N/A 23.632±0.00 N/A N/A 30.574±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037773 ENSMUST00000089581 N/A 3.611±0.00 N/A N/A 8.353±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110277 9.511±1.52 9.351±1.53 N/A N/A 9.970±2.69 7.998±0.37 5.279±0.00 8.332±1.07 7.497±1.76 6.932±0.42 N/A 13.257±2.81 N/A 12.392±0.63
ENSMUST00000123977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142536 N/A 8.630±2.13 N/A N/A 6.708±0.03 4.302±0.29 4.346±0.12 N/A N/A N/A 2.367±0.80 12.218±2.65 N/A N/A
ENSMUST00000153663 7.519±2.37 6.809±1.20 7.812±2.28 9.459±1.85 7.639±1.34 6.689±0.79 3.911±0.00 5.287±1.17 4.245±0.97 5.716±1.41 1.343±0.27 9.615±2.65 N/A 6.316±2.10
ENSMUSG00000049692 ENSMUST00000055421 0.072±0.04 0.143±0.06 0.073±0.00 N/A 0.091±0.03 0.036±0.00 0.045±0.03 0.032±0.01 0.012±0.01 0.100±0.00 0.125±0.03 0.152±0.10 0.038±0.01 85.342±40.42
ENSMUSG00000100963 ENSMUST00000188900 N/A 0.094±0.00 N/A 0.281±0.00 N/A N/A 0.024±0.01 N/A 0.030±0.02 N/A 0.092±0.03 0.146±0.06 0.040±0.01 N/A

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