C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00008T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000035403-ENSG00000185009 CGP 9606 10:73995193-74151063
GeneTranscriptPositionBiotype
ENSG00000035403 (VCL)
vinculin 		ENST00000211998 (VCL-201) 73998114-74120152 protein_coding
ENST00000372755 (VCL-001) 73998114-74121363 protein_coding
ENST00000436396 (VCL-002) 74083476-74120160 protein_coding
ENST00000461383 (VCL-005) 74043091-74063890 processed_transcript
ENST00000472585 (VCL-004) 74104928-74108975 retained_intron
ENST00000478896 (VCL-003) 73998116-74105293 processed_transcript
ENST00000623461 (VCL-007) 73995193-74120160 processed_transcript
ENST00000624354 (VCL-006) 73998114-74118048 nonsense_mediated_decay
ENSG00000185009 (AP3M1)
adaptor-related protein complex 3, mu 1 subunit 		ENST00000355264 (AP3M1-001) 74120255-74151063 protein_coding
ENST00000372745 (AP3M1-002) 74122964-74150842 protein_coding
ENST00000480373 (AP3M1-003) 74128878-74130004 processed_transcript
ENST00000487653 (AP3M1-004) 74138256-74150757 processed_transcript
ENSG00000225761 (RP11-417O11.5)
 ENST00000416076 (RP11-417O11.5-001) 74005137-74027915 sense_intronic
CIL_00008T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021823-ENSMUSG00000021824 CGP 10090 14:20929433-21052508
GeneTranscriptPositionBiotype
ENSMUSG00000021823 (Vcl)
vinculin 		ENSMUST00000022369 (Vcl-201) 20929433-21033673 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00008T_0001ENSG00000035403ENST00000211998ENST00000372755ENST00000436396ENST00000461383ENST00000472585ENST00000478896ENST00000623461ENST00000624354ENSG00000185009ENST00000355264ENST00000372745ENST00000480373ENST00000487653ENSG00000225761ENST00000416076CIL_00008T_0002ENSMUSG00000021823ENSMUST00000022369
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00008T_0001ENSG00000035403ENST00000211998ENST00000372755ENST00000436396ENST00000623461ENST00000624354ENSG00000185009ENST00000355264ENST00000372745ENSG00000225761ENST00000416076CIL_00008T_0002ENSMUSG00000021823ENSMUST00000022369
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000035403 ENST00000211998 11.847±0.00 25.631±0.00 5.637±0.00 2.471±0.49 16.574±2.72 27.452±7.77 24.882±17.84 11.499±10.52 21.509±18.82 23.938±15.54 16.738±4.53 9.396±5.20 10.674±1.86 18.906±10.21
ENST00000372755 N/A N/A N/A N/A N/A N/A N/A 1.349±0.00 N/A N/A N/A N/A N/A N/A
ENST00000436396 11.619±0.00 19.322±0.00 N/A 2.619±0.00 10.983±0.00 26.804±0.00 19.428±0.00 14.425±0.00 3.914±0.00 24.698±0.00 6.468±0.00 8.125±0.02 N/A 13.618±0.00
ENST00000461383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623461 N/A N/A 2.331±0.00 0.601±0.00 3.652±0.00 N/A 2.157±0.00 N/A N/A 3.462±0.00 N/A 2.545±0.00 N/A N/A
ENST00000624354 N/A N/A 3.948±0.00 N/A 11.050±0.00 7.930±0.00 N/A 1.288±0.00 N/A N/A N/A 8.711±2.01 24.507±0.00 4.453±0.00
ENSG00000185009 ENST00000355264 N/A 6.175±0.00 N/A 2.847±0.00 5.860±0.00 N/A N/A 4.211±2.98 3.928±0.00 N/A N/A 5.183±1.26 7.789±1.01 4.855±2.25
ENST00000372745 N/A N/A N/A 2.141±0.33 N/A N/A N/A 5.637±0.00 N/A N/A N/A 8.396±0.02 N/A 6.009±0.00
ENST00000480373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225761 ENST00000416076 N/A 0.344±0.00 0.211±0.00 0.058±0.00 0.503±0.43 0.139±0.01 0.070±0.05 0.018±0.00 0.418±0.00 0.493±0.08 0.105±0.00 0.291±0.17 0.340±0.00 0.117±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021823 ENSMUST00000022369 22.898±8.64 19.583±4.44 24.638±0.00 5.245±0.97 17.113±6.52 16.329±9.20 11.788±3.85 8.523±2.34 5.265±1.90 37.721±18.48 3.277±0.79 39.333±10.14 26.924±22.61 6.172±2.46

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