C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00009V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078687-ENSG00000141524 CGP 9606 17:78004168-78132407
GeneTranscriptPositionBiotype
ENSG00000167895 (TMC8)
transmembrane channel-like 8 		ENST00000318430 (TMC8-002) 78130786-78142968 protein_coding
ENST00000589691 (TMC8-003) 78130788-78142967 protein_coding
ENST00000590184 (TMC8-013) 78134949-78138071 processed_transcript
ENST00000590426 (TMC8-012) 78130770-78131595 protein_coding
ENST00000590799 (TMC8-006) 78130778-78132465 protein_coding
ENST00000591003 (TMC8-009) 78137654-78138167 processed_transcript
ENST00000591144 (TMC8-014) 78138363-78141229 processed_transcript
ENST00000591983 (TMC8-008) 78134868-78138071 retained_intron
ENST00000592399 (TMC8-007) 78134868-78137047 processed_transcript
ENSG00000238658 (RNU6-625P)
RNA, U6 small nuclear 625, pseudogene 		ENST00000459412 (RNU6-625P-201) 78066947-78067053 snRNA
ENSG00000267463 (UBE2V2P2)
ubiquitin-conjugating enzyme E2 variant 2 pseudgene 2 		ENST00000587677 (UBE2V2P2-001) 78066258-78066761 processed_pseudogene
ENSG00000279600 (RP11-637C24.5)
 ENST00000622935 (RP11-637C24.5-001) 78008421-78008855 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00009V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025571-ENSMUSG00000025572 CGP 10090 11:117654289-117782198
GeneTranscriptPositionBiotype
ENSMUSG00000025571 (Tnrc6c)
trinucleotide repeat containing 6C 		ENSMUST00000026658 (Tnrc6c-201) 117654289-117763437 protein_coding
ENSMUST00000106344 (Tnrc6c-001) 117654813-117763439 protein_coding
ENSMUST00000138299 (Tnrc6c-003) 117721018-117762264 protein_coding
ENSMUST00000140347 (Tnrc6c-005) 117742501-117749301 retained_intron
ENSMUST00000141115 (Tnrc6c-004) 117654573-117763428 retained_intron
ENSMUST00000141287 (Tnrc6c-002) 117749231-117751308 retained_intron
ENSMUSG00000025572 (Tmc6)
transmembrane channel-like gene family 6 		ENSMUST00000026659 (Tmc6-001) 117765988-117780639 protein_coding
ENSMUST00000103025 (Tmc6-002) 117775357-117780621 protein_coding
ENSMUST00000127227 (Tmc6-007) 117779192-117780658 protein_coding
ENSMUST00000131606 (Tmc6-003) 117765988-117779648 nonsense_mediated_decay
ENSMUST00000136729 (Tmc6-005) 117778742-117780944 protein_coding
ENSMUST00000143406 (Tmc6-006) 117775717-117779650 protein_coding
ENSMUST00000148220 (Tmc6-009) 117766060-117769073 retained_intron
ENSMUST00000149589 (Tmc6-008) 117770078-117773043 nonsense_mediated_decay
ENSMUST00000152304 (Tmc6-004) 117778938-117782198 protein_coding
ENSMUSG00000050106 (Tmc8)
transmembrane channel-like gene family 8 		ENSMUST00000050874 (Tmc8-001) 117782297-117793028 protein_coding
ENSMUST00000106334 (Tmc8-004) 117782315-117793110 protein_coding
ENSMUST00000117781 (Tmc8-005) 117782385-117792883 protein_coding
ENSMUST00000119455 (Tmc8-006) 117782658-117793083 protein_coding
ENSMUST00000127080 (Tmc8-002) 117782076-117784150 protein_coding
ENSMUST00000156458 (Tmc8-003) 117791188-117792613 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009V_0001ENSG00000167895ENST00000318430ENST00000589691ENST00000590184ENST00000590426ENST00000590799ENST00000591003ENST00000591144ENST00000591983ENST00000592399ENSG00000238658ENST00000459412ENSG00000267463ENST00000587677ENSG00000279600ENST00000622935CIL_00009V_0002ENSMUSG00000025571ENSMUST00000026658ENSMUST00000106344ENSMUST00000138299ENSMUST00000140347ENSMUST00000141115ENSMUST00000141287ENSMUSG00000025572ENSMUST00000026659ENSMUST00000103025ENSMUST00000127227ENSMUST00000131606ENSMUST00000136729ENSMUST00000143406ENSMUST00000148220ENSMUST00000149589ENSMUST00000152304ENSMUSG00000050106ENSMUST00000050874ENSMUST00000106334ENSMUST00000117781ENSMUST00000119455ENSMUST00000127080ENSMUST00000156458
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009V_0001ENSG00000167895ENST00000318430ENST00000589691ENSG00000238658ENST00000459412ENSG00000267463ENST00000587677ENSG00000279600ENST00000622935CIL_00009V_0002ENSMUSG00000025571ENSMUST00000026658ENSMUST00000106344ENSMUST00000138299ENSMUST00000141115ENSMUSG00000025572ENSMUST00000026659ENSMUST00000148220ENSMUSG00000050106ENSMUST00000050874ENSMUST00000106334ENSMUST00000117781ENSMUST00000119455
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167895 ENST00000318430 N/A 40.259±0.00 N/A N/A 1.773±0.00 N/A N/A N/A N/A 4.811±1.58 N/A N/A 3.758±0.74 N/A
ENST00000589691 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.733±0.00 N/A 5.194±0.00 N/A N/A
ENST00000590184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238658 ENST00000459412 N/A N/A N/A 0.209±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267463 ENST00000587677 N/A N/A N/A 0.019±0.00 N/A N/A 0.171±0.08 N/A N/A 0.539±0.00 N/A 0.210±0.00 N/A N/A
ENSG00000279600 ENST00000622935 0.167±0.00 0.080±0.00 N/A 0.083±0.00 0.492±0.00 0.862±0.00 0.049±0.00 1.218±0.00 0.914±0.00 0.637±0.00 N/A 0.062±0.00 N/A 0.130±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025571 ENSMUST00000026658 1.090±0.00 1.418±0.08 N/A 4.737±1.73 3.990±0.60 N/A N/A 0.812±0.17 0.772±0.13 2.464±1.07 N/A N/A N/A 2.299±0.43
ENSMUST00000106344 3.534±1.60 0.740±0.00 0.823±0.21 4.022±1.34 1.744±0.00 4.720±2.25 2.390±0.11 1.141±0.00 0.695±0.19 1.443±0.31 1.010±0.34 3.477±1.90 1.266±0.12 3.427±0.31
ENSMUST00000138299 4.463±1.54 N/A 2.465±0.52 13.398±2.44 2.919±1.24 N/A 2.332±0.91 1.474±0.54 1.488±0.62 2.881±1.19 2.720±0.25 4.724±1.68 2.711±0.98 5.141±1.19
ENSMUST00000140347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141115 N/A N/A 0.564±0.00 2.474±0.42 N/A N/A N/A N/A 0.271±0.07 0.704±0.00 0.416±0.00 0.906±0.00 0.312±0.08 N/A
ENSMUST00000141287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025572 ENSMUST00000026659 15.693±5.11 18.279±5.81 21.899±2.59 1.025±0.04 20.376±9.44 46.375±2.36 3.716±1.27 13.044±2.01 14.523±13.15 26.545±3.05 0.875±0.41 15.658±4.97 5.136±1.27 2.466±1.15
ENSMUST00000103025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148220 N/A N/A N/A 2.897±0.00 N/A N/A N/A N/A N/A N/A 1.571±0.00 20.216±0.00 13.654±0.00 1.615±0.00
ENSMUST00000149589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050106 ENSMUST00000050874 4.057±0.00 2.378±0.00 N/A 0.467±0.06 6.541±0.26 N/A 0.874±0.13 N/A 10.891±5.55 N/A N/A N/A N/A 0.634±0.00
ENSMUST00000106334 1.913±0.00 N/A N/A N/A 11.050±2.21 8.170±0.86 1.188±0.41 N/A 9.018±4.05 N/A 0.521±0.16 N/A 2.041±0.20 0.623±0.00
ENSMUST00000117781 N/A N/A N/A N/A 2.207±0.00 N/A 2.338±0.00 N/A 0.950±0.14 N/A N/A N/A N/A N/A
ENSMUST00000119455 N/A N/A N/A N/A N/A 9.121±0.00 N/A N/A N/A N/A 0.268±0.00 3.192±0.00 3.671±0.32 N/A
ENSMUST00000127080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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