C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000C4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063445-ENSDARG00000058995 CGP 7955 2:3879432-3908363
GeneTranscriptPositionBiotype
ENSDARG00000096972 (jmjd4)
 ENSDART00000156581 (jmjd4-001) 3906371-3910502 antisense

Danio rerio Ensembl (Zv9)

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CIL_0000C4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143740-ENSG00000143740 CGP 9606 1:227728539-227781231
GeneTranscriptPositionBiotype
ENSG00000143740 (SNAP47)
synaptosomal-associated protein, 47kDa 		ENST00000315781 (SNAP47-201) 227734996-227781231 protein_coding
ENST00000366759 (SNAP47-001) 227734996-227781226 protein_coding
ENST00000366760 (SNAP47-002) 227728657-227781226 protein_coding
ENST00000418653 (SNAP47-004) 227735431-227776970 protein_coding
ENST00000426344 (SNAP47-003) 227735436-227776969 protein_coding
ENST00000470038 (SNAP47-008) 227736173-227748115 processed_transcript
ENST00000475930 (SNAP47-006) 227728618-227748186 processed_transcript
ENST00000478768 (SNAP47-009) 227748154-227770744 protein_coding
ENST00000480265 (SNAP47-010) 227728549-227734352 processed_transcript
ENST00000480897 (SNAP47-005) 227728539-227734352 processed_transcript
ENST00000491439 (SNAP47-007) 227728707-227759485 processed_transcript
ENST00000606873 (SNAP47-011) 227748063-227759652 protein_coding
ENST00000617596 (SNAP47-012) 227735453-227781226 protein_coding
ENSG00000230005 (SNAP47-AS1)
SNAP47 antisense RNA 1 		ENST00000413347 (SNAP47-AS1-001) 227743831-227747191 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0000C4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000009894-ENSMUSG00000036819 CGP 10090 11:59407134-59458567
GeneTranscriptPositionBiotype
ENSMUSG00000009894 (Snap47)
synaptosomal-associated protein, 47 		ENSMUST00000010038 (Snap47-001) 59407134-59449999 protein_coding
ENSMUST00000120940 (Snap47-006) 59407144-59450007 protein_coding
ENSMUST00000125846 (Snap47-007) 59438449-59451186 protein_coding
ENSMUST00000132969 (Snap47-002) 59438034-59449999 protein_coding
ENSMUST00000136436 (Snap47-004) 59428767-59449913 protein_coding
ENSMUST00000145550 (Snap47-005) 59438256-59447491 protein_coding
ENSMUST00000150297 (Snap47-008) 59438288-59449916 protein_coding
ENSMUST00000156146 (Snap47-003) 59428761-59449999 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000C4_0001ENSDARG00000096972ENSDART00000156581CIL_0000C4_0002ENSG00000143740ENST00000315781ENST00000366759ENST00000366760ENST00000418653ENST00000426344ENST00000470038ENST00000475930ENST00000478768ENST00000480265ENST00000480897ENST00000491439ENST00000606873ENST00000617596ENSG00000230005ENST00000413347CIL_0000C4_0003ENSMUSG00000009894ENSMUST00000010038ENSMUST00000120940ENSMUST00000125846ENSMUST00000132969ENSMUST00000136436ENSMUST00000145550ENSMUST00000150297ENSMUST00000156146
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000C4_0001ENSDARG00000096972ENSDART00000156581CIL_0000C4_0002ENSG00000143740ENST00000315781ENST00000366759ENST00000366760ENST00000418653ENST00000426344ENST00000491439ENST00000617596ENSG00000230005ENST00000413347CIL_0000C4_0003ENSMUSG00000009894ENSMUST00000010038ENSMUST00000120940ENSMUST00000136436ENSMUST00000156146
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000096972 ENSDART00000156581 N/A N/A N/A N/A N/A N/A 2.597±1.05 0.520±0.25 N/A N/A 1.319±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143740 ENST00000315781 N/A N/A N/A N/A N/A N/A 0.732±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000366759 N/A N/A N/A N/A N/A N/A 0.766±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000366760 2.123±0.00 N/A N/A 4.918±0.00 N/A N/A 7.105±0.00 2.154±0.00 N/A 1.314±0.00 N/A 6.943±0.00 5.433±0.00 N/A
ENST00000418653 N/A N/A N/A N/A N/A 1.665±0.00 N/A N/A N/A 1.218±0.00 N/A N/A N/A N/A
ENST00000426344 N/A N/A 0.561±0.00 N/A N/A N/A N/A N/A N/A N/A 1.591±0.00 N/A N/A N/A
ENST00000470038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.763±0.00 N/A N/A N/A
ENST00000606873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617596 6.836±0.00 7.412±0.00 N/A 11.750±4.26 4.216±2.36 4.723±3.31 9.026±0.00 6.227±4.94 3.882±0.72 3.873±1.94 7.613±4.83 15.525±16.35 12.320±5.14 17.461±2.20
ENSG00000230005 ENST00000413347 N/A 0.010±0.00 0.128±0.00 N/A 0.076±0.06 0.100±0.00 0.018±0.00 N/A N/A 0.118±0.00 N/A 0.073±0.05 N/A 0.216±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009894 ENSMUST00000010038 27.719±1.10 29.761±0.84 34.199±1.76 154.962±10.34 14.864±3.20 11.058±1.47 20.474±1.00 47.645±7.68 27.898±14.66 17.471±1.04 8.570±0.52 26.192±5.31 27.124±5.49 11.227±2.77
ENSMUST00000120940 11.660±0.78 26.880±4.03 N/A N/A 7.741±0.96 7.639±2.51 N/A 19.698±0.00 13.448±0.00 11.530±1.81 N/A 16.900±2.40 N/A N/A
ENSMUST00000125846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136436 N/A N/A N/A 197.590±0.00 N/A N/A N/A N/A N/A N/A N/A 37.725±0.00 32.631±7.56 N/A
ENSMUST00000145550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.684±0.00

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