C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000F8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079716-ENSDARG00000077495 CGP 7955 25:6703048-6784634
GeneTranscriptPositionBiotype
ENSDARG00000077495 (ptpn9a)
protein tyrosine phosphatase, non-receptor type 9, a 		ENSDART00000110389 (ptpn9a-201) 6752339-6784634 protein_coding
ENSDART00000153768 (ptpn9a-001) 6756992-6773956 protein_coding
ENSDARG00000079716 (sin3aa)
SIN3 homolog A, transcription regulator (yeast) a 		ENSDART00000083539 (sin3aa-001) 6703048-6742869 protein_coding
ENSDART00000138782 (sin3aa-002) 6730828-6744427 protein_coding
CIL_0000F8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169375-ENSG00000169410 CGP 9606 15:75369379-75579289
GeneTranscriptPositionBiotype
ENSG00000169375 (SIN3A)
SIN3 transcription regulator family member A 		ENST00000360439 (SIN3A-002) 75370933-75455783 protein_coding
ENST00000394947 (SIN3A-001) 75369379-75451704 protein_coding
ENST00000394949 (SIN3A-004) 75371130-75451585 protein_coding
ENST00000562776 (SIN3A-007) 75414252-75455026 protein_coding
ENST00000564778 (SIN3A-005) 75412990-75455842 protein_coding
ENST00000565264 (SIN3A-008) 75430321-75451746 protein_coding
ENST00000566640 (SIN3A-010) 75371982-75376380 retained_intron
ENST00000567289 (SIN3A-003) 75419210-75451664 protein_coding
ENST00000568190 (SIN3A-013) 75422719-75455815 protein_coding
ENST00000568309 (SIN3A-015) 75422692-75455815 protein_coding
ENST00000568431 (SIN3A-014) 75414287-75455813 protein_coding
ENST00000568919 (SIN3A-012) 75430069-75451537 retained_intron
ENST00000570021 (SIN3A-009) 75384008-75389821 retained_intron
ENST00000570115 (SIN3A-006) 75422643-75455840 protein_coding
ENST00000570124 (SIN3A-011) 75375740-75381088 retained_intron
ENSG00000169410 (PTPN9)
protein tyrosine phosphatase, non-receptor type 9 		ENST00000306726 (PTPN9-201) 75467127-75579289 protein_coding
ENST00000561731 (PTPN9-004) 75513191-75524274 protein_coding
ENST00000563835 (PTPN9-002) 75469810-75479916 processed_transcript
ENST00000564970 (PTPN9-005) 75487288-75505816 processed_transcript
ENST00000568108 (PTPN9-003) 75468861-75470909 retained_intron
ENST00000618819 (PTPN9-001) 75463251-75579289 protein_coding
ENSG00000241890 (RPL13P4)
ribosomal protein L13 pseudogene 4 		ENST00000484355 (RPL13P4-001) 75388267-75388828 processed_pseudogene
ENSG00000259931 (CTD-2323K18.2)
 ENST00000566222 (CTD-2323K18.2-001) 75512770-75513040 processed_pseudogene
ENSG00000260165 (CTD-2323K18.3)
 ENST00000569468 (CTD-2323K18.3-001) 75480661-75480836 unprocessed_pseudogene
ENSG00000261714 (CTD-2562G15.2)
 ENST00000569073 (CTD-2562G15.2-001) 75415249-75416020 processed_pseudogene
ENSG00000276744 (CTD-2562G15.3)
 ENST00000617588 (CTD-2562G15.3-001) 75452964-75453947 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000F8_0001ENSDARG00000077495ENSDART00000110389ENSDART00000153768ENSDARG00000079716ENSDART00000083539ENSDART00000138782CIL_0000F8_0002ENSG00000169375ENST00000360439ENST00000394947ENST00000394949ENST00000562776ENST00000564778ENST00000565264ENST00000566640ENST00000567289ENST00000568190ENST00000568309ENST00000568431ENST00000568919ENST00000570021ENST00000570115ENST00000570124ENSG00000169410ENST00000306726ENST00000561731ENST00000563835ENST00000564970ENST00000568108ENST00000618819ENSG00000241890ENST00000484355ENSG00000259931ENST00000566222ENSG00000260165ENST00000569468ENSG00000261714ENST00000569073ENSG00000276744ENST00000617588
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000F8_0001ENSDARG00000077495ENSDART00000110389ENSDART00000153768ENSDARG00000079716ENSDART00000083539CIL_0000F8_0002ENSG00000169375ENST00000360439ENST00000394947ENST00000394949ENSG00000169410ENST00000306726ENST00000568108ENST00000618819ENSG00000241890ENST00000484355ENSG00000259931ENST00000566222ENSG00000260165ENST00000569468ENSG00000261714ENST00000569073ENSG00000276744ENST00000617588
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000077495 ENSDART00000110389 N/A N/A N/A 6.413±1.66 N/A N/A 1.974±0.23 1.232±0.44 0.446±0.00 N/A 1.173±0.00 N/A N/A N/A
ENSDART00000153768 N/A N/A N/A N/A N/A N/A 4.348±0.38 2.317±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000079716 ENSDART00000083539 N/A N/A N/A 5.506±0.00 N/A N/A 4.212±1.81 7.472±0.29 N/A N/A N/A N/A N/A N/A
ENSDART00000138782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169375 ENST00000360439 N/A N/A 1.826±0.00 2.234±0.00 2.270±0.00 3.252±0.12 N/A 2.710±0.00 3.017±0.00 9.704±0.00 3.546±2.12 8.587±3.35 7.127±1.80 9.636±1.93
ENST00000394947 5.049±0.00 N/A 0.966±0.00 2.786±1.80 2.894±1.55 1.965±0.00 1.542±0.77 3.103±0.00 N/A N/A N/A 4.203±1.79 3.259±0.55 8.012±0.00
ENST00000394949 10.410±0.00 18.156±0.00 1.275±0.00 7.661±0.00 4.556±2.25 4.811±2.47 3.280±1.69 5.113±2.50 2.165±0.46 7.339±0.00 4.083±0.00 5.729±3.19 9.018±0.00 17.615±0.32
ENST00000562776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169410 ENST00000306726 6.138±0.00 7.371±0.00 1.087±0.00 5.241±2.96 3.339±1.46 4.517±2.22 2.491±2.06 5.125±4.05 2.838±0.93 5.373±2.12 1.060±0.76 6.636±2.13 10.804±2.11 9.218±1.09
ENST00000561731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.193±0.00 N/A N/A N/A
ENST00000618819 N/A N/A 0.414±0.00 0.316±0.00 0.590±0.00 0.369±0.00 N/A N/A 0.421±0.00 N/A N/A 0.416±0.00 N/A N/A
ENSG00000241890 ENST00000484355 N/A 0.058±0.00 0.433±0.00 0.099±0.02 0.345±0.00 0.082±0.00 N/A N/A N/A 0.485±0.23 0.103±0.00 N/A N/A 0.026±0.00
ENSG00000259931 ENST00000566222 N/A 0.040±0.00 N/A 0.117±0.00 N/A N/A N/A N/A 1.740±0.00 N/A N/A 0.233±0.09 0.172±0.00 N/A
ENSG00000260165 ENST00000569468 0.445±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261714 ENST00000569073 N/A 0.319±0.00 0.524±0.00 0.043±0.00 N/A N/A N/A N/A 0.070±0.03 N/A 0.108±0.00 N/A 0.049±0.00 0.050±0.00
ENSG00000276744 ENST00000617588 0.100±0.00 0.231±0.00 N/A 0.032±0.00 0.184±0.00 0.200±0.15 0.075±0.00 0.188±0.05 0.235±0.16 0.856±0.75 0.652±0.00 0.550±0.52 0.072±0.00 0.866±0.46

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