C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000IM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167460-ENSG00000167461 CGP 9606 19:16067021-16134234
GeneTranscriptPositionBiotype
ENSG00000167460 (TPM4)
tropomyosin 4 		ENST00000300933 (TPM4-002) 16076306-16103005 protein_coding
ENST00000344824 (TPM4-001) 16067507-16101790 protein_coding
ENST00000586193 (TPM4-017) 16088639-16093598 retained_intron
ENST00000586499 (TPM4-008) 16067700-16088093 protein_coding
ENST00000586833 (TPM4-009) 16075686-16093544 protein_coding
ENST00000587201 (TPM4-011) 16076499-16088452 retained_intron
ENST00000588032 (TPM4-016) 16088059-16102377 nonsense_mediated_decay
ENST00000588410 (TPM4-012) 16077021-16088066 protein_coding
ENST00000588483 (TPM4-014) 16080826-16086476 protein_coding
ENST00000588507 (TPM4-010) 16076100-16093564 protein_coding
ENST00000589897 (TPM4-007) 16067021-16076141 protein_coding
ENST00000590180 (TPM4-013) 16080056-16082046 processed_transcript
ENST00000591226 (TPM4-006) 16099667-16102338 retained_intron
ENST00000591645 (TPM4-018) 16093107-16101757 processed_transcript
ENST00000592138 (TPM4-015) 16081723-16093581 protein_coding
ENST00000592822 (TPM4-019) 16093572-16095428 protein_coding
ENSG00000167461 (RAB8A)
RAB8A, member RAS oncogene family 		ENST00000300935 (RAB8A-001) 16111629-16134234 protein_coding
ENST00000586682 (RAB8A-002) 16111897-16133010 protein_coding
ENST00000587156 (RAB8A-007) 16111897-16127661 retained_intron
ENST00000588105 (RAB8A-006) 16111895-16112757 processed_transcript
ENST00000589697 (RAB8A-003) 16111915-16126990 retained_intron
ENST00000590899 (RAB8A-005) 16111892-16122132 retained_intron
ENST00000592971 (RAB8A-004) 16127951-16132319 retained_intron
ENSG00000267373 (CTD-2231E14.5)
 ENST00000587693 (CTD-2231E14.5-001) 16103761-16104254 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000IM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031799-ENSMUSG00000003037 CGP 10090 8:72134975-72183904
GeneTranscriptPositionBiotype
ENSMUSG00000003037 (Rab8a)
RAB8A, member RAS oncogene family 		ENSMUST00000003121 (Rab8a-001) 72161200-72183904 protein_coding
ENSMUST00000128203 (Rab8a-003) 72161359-72176057 retained_intron
ENSMUST00000135613 (Rab8a-002) 72161313-72175863 processed_transcript
ENSMUSG00000031799 (Tpm4)
tropomyosin 4 		ENSMUST00000003575 (Tpm4-001) 72135259-72153142 protein_coding
ENSMUST00000123177 (Tpm4-002) 72134975-72144709 processed_transcript
ENSMUSG00000087502 (Gm16091)
predicted gene 16091 		ENSMUST00000156664 (Gm16091-001) 72147601-72160855 processed_transcript
ENSMUSG00000097472 (Gm26586)
predicted gene, 26586 		ENSMUST00000181918 (Gm26586-201) 72137389-72140820 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IM_0001ENSG00000167460ENST00000300933ENST00000344824ENST00000586193ENST00000586499ENST00000586833ENST00000587201ENST00000588032ENST00000588410ENST00000588483ENST00000588507ENST00000589897ENST00000590180ENST00000591226ENST00000591645ENST00000592138ENST00000592822ENSG00000167461ENST00000300935ENST00000586682ENST00000587156ENST00000588105ENST00000589697ENST00000590899ENST00000592971ENSG00000267373ENST00000587693CIL_0000IM_0002ENSMUSG00000003037ENSMUST00000003121ENSMUST00000128203ENSMUST00000135613ENSMUSG00000031799ENSMUST00000003575ENSMUST00000123177ENSMUSG00000087502ENSMUST00000156664ENSMUSG00000097472ENSMUST00000181918
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IM_0001ENSG00000167460ENST00000300933ENST00000344824ENST00000588032ENST00000591645ENSG00000167461ENST00000300935ENST00000586682ENST00000587156ENST00000590899ENST00000592971ENSG00000267373ENST00000587693CIL_0000IM_0002ENSMUSG00000003037ENSMUST00000003121ENSMUST00000128203ENSMUSG00000031799ENSMUST00000003575ENSMUST00000123177ENSMUSG00000087502ENSMUST00000156664ENSMUSG00000097472ENSMUST00000181918
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167460 ENST00000300933 155.520±0.00 112.862±0.00 N/A 27.187±22.73 42.647±29.67 63.474±55.92 14.084±9.92 78.845±0.00 22.777±13.28 188.523±181.28 11.062±0.00 152.437±93.80 209.359±31.71 78.968±17.72
ENST00000344824 N/A N/A 7.098±0.00 N/A 19.451±0.00 7.483±0.00 N/A 2.795±0.00 52.252±0.00 N/A N/A 42.362±9.70 N/A N/A
ENST00000586193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588032 N/A N/A 5.686±0.00 7.564±0.00 55.318±0.00 13.969±0.00 N/A N/A N/A 33.817±0.00 2.307±0.00 112.740±66.32 160.216±0.00 N/A
ENST00000588410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591645 N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.696±0.00 N/A N/A N/A N/A
ENST00000592138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167461 ENST00000300935 5.694±0.00 N/A 2.023±0.00 2.180±0.90 4.024±0.59 3.730±1.45 0.972±0.14 4.733±0.91 3.660±0.67 6.539±1.77 0.633±0.00 5.896±1.23 6.360±0.42 4.926±0.45
ENST00000586682 13.164±0.00 N/A N/A 1.067±0.00 7.279±0.00 4.159±0.00 1.890±0.00 10.615±0.00 7.465±0.00 N/A 1.615±0.95 16.176±6.57 13.426±4.48 5.537±0.00
ENST00000587156 N/A N/A 5.288±0.00 9.579±1.42 12.750±0.00 14.476±1.47 2.970±0.93 32.557±0.00 11.795±5.55 21.164±0.00 4.606±0.00 53.869±38.75 55.827±0.00 21.223±1.42
ENST00000588105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.172±0.00 31.206±0.00
ENST00000592971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.272±0.00 N/A
ENSG00000267373 ENST00000587693 6.557±0.00 14.400±0.00 N/A 7.021±0.00 9.043±0.00 3.464±0.00 4.627±0.00 8.597±0.00 4.512±0.00 4.343±0.00 2.510±0.00 3.013±2.40 0.280±0.00 5.852±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003037 ENSMUST00000003121 12.365±2.06 11.373±4.56 7.992±3.59 9.758±5.77 14.001±5.01 25.598±3.15 4.222±0.55 18.540±1.02 14.629±4.14 13.579±0.95 1.431±0.20 11.907±4.74 10.698±5.71 6.646±2.35
ENSMUST00000128203 24.222±6.22 N/A 37.157±1.64 35.780±8.17 28.089±9.05 N/A 18.991±1.22 62.328±9.07 35.457±4.63 29.874±5.34 2.612±0.64 53.638±34.31 104.838±76.39 35.492±30.22
ENSMUST00000135613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031799 ENSMUST00000003575 79.271±8.80 49.330±6.23 67.054±14.77 31.789±21.19 60.926±16.24 51.932±12.63 24.398±2.97 34.822±1.71 27.218±19.51 137.346±7.61 10.375±0.70 108.838±43.76 271.111±86.01 6.081±5.02
ENSMUST00000123177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 106.601±0.00
ENSMUSG00000087502 ENSMUST00000156664 3.827±1.81 2.153±0.42 4.172±0.00 3.972±0.68 5.701±2.62 1.857±1.02 1.988±0.42 1.732±0.56 1.300±0.62 5.157±2.83 0.477±0.22 6.459±2.93 5.162±2.68 0.881±0.37
ENSMUSG00000097472 ENSMUST00000181918 N/A N/A N/A 2.242±0.00 N/A N/A N/A N/A N/A N/A N/A 30.910±0.00 N/A 9.353±0.00

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