C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000KY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045075-ENSDARG00000045074 CGP 7955 12:28802243-28816788
GeneTranscriptPositionBiotype
ENSDARG00000045074 (arl4d)
ADP-ribosylation factor-like 4D 		ENSDART00000066269 (arl4d-001) 28814090-28816788 protein_coding
ENSDARG00000045075 (tmem106a)
transmembrane protein 106A 		ENSDART00000066270 (tmem106a-003) 28802638-28807588 protein_coding
ENSDART00000123739 (tmem106a-002) 28802381-28807627 protein_coding
ENSDART00000133023 (tmem106a-001) 28802243-28808063 protein_coding
ENSDART00000143389 (tmem106a-005) 28802326-28805452 processed_transcript
ENSDART00000145952 (tmem106a-004) 28802775-28803682 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0000KY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184988-ENSG00000175906 CGP 9606 17:43211835-43401137
GeneTranscriptPositionBiotype
ENSG00000175906 (ARL4D)
ADP-ribosylation factor-like 4D 		ENST00000320033 (ARL4D-001) 43398959-43401137 protein_coding
ENSG00000188825 (LINC00910)
long intergenic non-protein coding RNA 910 		ENST00000341011 (LINC00910-004) 43369845-43388545 lincRNA
ENST00000586231 (LINC00910-003) 43385863-43389199 lincRNA
ENST00000587874 (LINC00910-006) 43377575-43388331 lincRNA
ENST00000588654 (LINC00910-007) 43381288-43388334 lincRNA
ENST00000592094 (LINC00910-002) 43377207-43388335 lincRNA
ENST00000592135 (LINC00910-001) 43375928-43388312 lincRNA
ENSG00000274452 (U2)
U2 spliceosomal RNA 		ENST00000619225 (U2.1-203) 43290291-43290481 snRNA
ENSG00000278774 (U2)
U2 spliceosomal RNA 		ENST00000613956 (U2.1-212) 43273101-43273292 snRNA
ENSG00000279602 (CTD-3014M21.1)
 ENST00000624705 (CTD-3014M21.1-001) 43360041-43361361 TEC

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KY_0001ENSDARG00000045074ENSDART00000066269ENSDARG00000045075ENSDART00000066270ENSDART00000123739ENSDART00000133023ENSDART00000143389ENSDART00000145952CIL_0000KY_0002ENSG00000175906ENST00000320033ENSG00000188825ENST00000341011ENST00000586231ENST00000587874ENST00000588654ENST00000592094ENST00000592135ENSG00000274452ENST00000619225ENSG00000278774ENST00000613956ENSG00000279602ENST00000624705
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KY_0001ENSDARG00000045074ENSDART00000066269ENSDARG00000045075ENSDART00000066270ENSDART00000123739ENSDART00000133023ENSDART00000143389CIL_0000KY_0002ENSG00000175906ENST00000320033ENSG00000188825ENST00000341011ENST00000586231ENST00000587874ENST00000588654ENST00000592094ENST00000592135ENSG00000274452ENST00000619225ENSG00000278774ENST00000613956ENSG00000279602ENST00000624705
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045074 ENSDART00000066269 N/A N/A N/A 23.627±6.34 N/A N/A 20.873±8.29 6.523±0.87 4.025±0.00 N/A 13.324±0.00 N/A N/A N/A
ENSDARG00000045075 ENSDART00000066270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.191±0.00 N/A N/A N/A
ENSDART00000123739 N/A N/A N/A 3.410±0.70 N/A N/A 12.253±4.81 N/A 4.764±0.00 N/A 4.214±0.00 N/A N/A N/A
ENSDART00000133023 N/A N/A N/A 2.780±0.63 N/A N/A 11.462±5.66 13.425±4.79 1.351±0.00 N/A 5.128±0.00 N/A N/A N/A
ENSDART00000143389 N/A N/A N/A 1.796±0.00 N/A N/A 8.907±0.00 N/A 3.607±0.00 N/A N/A N/A N/A N/A
ENSDART00000145952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000175906 ENST00000320033 3.958±0.00 3.093±0.00 0.923±0.00 3.763±0.48 2.412±1.44 6.662±5.54 1.830±1.05 20.062±18.50 7.340±4.01 9.802±9.11 0.780±0.18 12.914±9.64 9.642±2.66 18.731±4.49
ENSG00000188825 ENST00000341011 N/A N/A N/A N/A N/A N/A 0.065±0.00 0.295±0.00 0.144±0.00 0.127±0.11 N/A 0.480±0.31 0.106±0.06 0.709±0.00
ENST00000586231 0.242±0.00 1.096±0.00 N/A 0.256±0.13 0.305±0.00 0.150±0.00 0.155±0.00 0.298±0.15 0.060±0.00 0.233±0.00 N/A 0.475±0.07 0.087±0.01 0.205±0.05
ENST00000587874 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000588654 N/A N/A N/A N/A N/A 0.553±0.00 N/A N/A N/A N/A 0.248±0.00 N/A 0.414±0.00 N/A
ENST00000592094 N/A N/A N/A N/A N/A N/A N/A 0.514±0.00 0.798±0.00 N/A N/A N/A 0.185±0.00 N/A
ENST00000592135 N/A 0.982±0.00 0.249±0.00 0.822±0.00 0.427±0.34 0.113±0.01 0.155±0.14 N/A 0.126±0.07 0.495±0.00 N/A 0.833±0.31 0.200±0.08 0.587±0.00
ENSG00000274452 ENST00000619225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.469±0.00 N/A
ENSG00000278774 ENST00000613956 N/A N/A N/A N/A N/A N/A N/A 1.396±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000279602 ENST00000624705 0.209±0.00 2.408±0.00 0.605±0.00 0.797±0.66 1.693±0.94 1.877±1.29 0.584±0.53 0.992±0.50 2.426±2.36 2.598±1.77 0.813±0.60 1.633±1.44 0.263±0.13 1.022±0.49

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