C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000N5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187527-ENSG00000127249 CGP 9606 3:193274790-193593111
GeneTranscriptPositionBiotype
ENSG00000127249 (ATP13A4)
ATPase type 13A4 		ENST00000295548 (ATP13A4-009) 193458598-193554799 protein_coding
ENST00000342695 (ATP13A4-003) 193402358-193555122 protein_coding
ENST00000392443 (ATP13A4-007) 193402358-193554987 protein_coding
ENST00000400270 (ATP13A4-010) 193402077-193418983 protein_coding
ENST00000428352 (ATP13A4-001) 193402078-193467348 nonsense_mediated_decay
ENST00000437904 (ATP13A4-011) 193438494-193442552 nonsense_mediated_decay
ENST00000450950 (ATP13A4-004) 193402350-193554869 nonsense_mediated_decay
ENST00000474776 (ATP13A4-005) 193433860-193439095 retained_intron
ENST00000482964 (ATP13A4-006) 193402500-193412371 processed_transcript
ENST00000489140 (ATP13A4-008) 193502545-193593111 processed_transcript
ENST00000490925 (ATP13A4-002) 193440115-193554907 retained_intron
ENSG00000127252 (HRASLS)
HRAS-like suppressor 		ENST00000264735 (HRASLS-001) 193241125-193270855 protein_coding
ENST00000416012 (HRASLS-002) 193263002-193277738 nonsense_mediated_decay
ENSG00000187527 (ATP13A5)
ATPase type 13A5 		ENST00000342358 (ATP13A5-001) 193274790-193378843 protein_coding
ENST00000446087 (ATP13A5-005) 193362614-193378820 protein_coding
ENST00000488957 (ATP13A5-003) 193312701-193324012 retained_intron
ENST00000495496 (ATP13A5-004) 193274889-193313363 processed_transcript
ENST00000620313 (ATP13A5-201) 193274796-193284948 protein_coding
ENSG00000225473 (ATP13A4-AS1)
ATP13A4 antisense RNA 1 		ENST00000426459 (ATP13A4-AS1-002) 193553412-193554912 antisense
ENST00000431512 (ATP13A4-AS1-001) 193553213-193555088 antisense
ENSG00000236297 (RP11-175P19.2)
 ENST00000420064 (RP11-175P19.2-001) 193578812-193579413 transcribed_processed_pseudogene
ENST00000449483 (RP11-175P19.2-002) 193579001-193593090 processed_transcript
ENSG00000236508 (ATP13A5-AS1)
ATP13A5 antisense RNA 1 		ENST00000414634 (ATP13A5-AS1-001) 193307244-193314362 antisense
CIL_0000N5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048939-ENSMUSG00000038094 CGP 10090 16:29231851-29544864
GeneTranscriptPositionBiotype
ENSMUSG00000038094 (Atp13a4)
ATPase type 13A4 		ENSMUST00000039090 (Atp13a4-003) 29420745-29544864 protein_coding
ENSMUST00000057018 (Atp13a4-006) 29396041-29541483 protein_coding
ENSMUST00000182013 (Atp13a4-002) 29396091-29544864 nonsense_mediated_decay
ENSMUST00000182094 (Atp13a4-011) 29396417-29407638 retained_intron
ENSMUST00000182168 (Atp13a4-010) 29420736-29441160 nonsense_mediated_decay
ENSMUST00000182357 (Atp13a4-008) 29408668-29440123 retained_intron
ENSMUST00000182573 (Atp13a4-007) 29395853-29456580 nonsense_mediated_decay
ENSMUST00000182627 (Atp13a4-001) 29396028-29541597 protein_coding
ENSMUST00000182676 (Atp13a4-009) 29396046-29408325 processed_transcript
ENSMUST00000182694 (Atp13a4-004) 29540479-29544859 retained_intron
ENSMUST00000182824 (Atp13a4-005) 29540426-29544798 retained_intron
ENSMUSG00000048939 (Atp13a5)
ATPase type 13A5 		ENSMUST00000075806 (Atp13a5-001) 29231851-29378732 protein_coding
ENSMUST00000142681 (Atp13a5-002) 29231914-29378706 nonsense_mediated_decay
ENSMUST00000143373 (Atp13a5-003) 29232460-29378667 protein_coding
ENSMUST00000152040 (Atp13a5-004) 29333965-29378583 protein_coding
ENSMUSG00000083141 (Gm15752)
predicted gene 15752 		ENSMUST00000117427 (Gm15752-001) 29283966-29284359 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000N5_0001ENSG00000127249ENST00000295548ENST00000342695ENST00000392443ENST00000400270ENST00000428352ENST00000437904ENST00000450950ENST00000474776ENST00000482964ENST00000489140ENST00000490925ENSG00000127252ENST00000264735ENST00000416012ENSG00000187527ENST00000342358ENST00000446087ENST00000488957ENST00000495496ENST00000620313ENSG00000225473ENST00000426459ENST00000431512ENSG00000236297ENST00000420064ENST00000449483ENSG00000236508ENST00000414634CIL_0000N5_0002ENSMUSG00000038094ENSMUST00000039090ENSMUST00000057018ENSMUST00000182013ENSMUST00000182094ENSMUST00000182168ENSMUST00000182357ENSMUST00000182573ENSMUST00000182627ENSMUST00000182676ENSMUST00000182694ENSMUST00000182824ENSMUSG00000048939ENSMUST00000075806ENSMUST00000142681ENSMUST00000143373ENSMUST00000152040ENSMUSG00000083141ENSMUST00000117427
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000N5_0001ENSG00000127249ENST00000295548ENST00000342695ENST00000392443ENST00000400270ENST00000428352ENST00000437904ENST00000450950ENST00000482964ENST00000489140ENST00000490925ENSG00000127252ENST00000264735ENST00000416012ENSG00000187527ENST00000342358ENST00000446087ENST00000488957ENST00000495496ENST00000620313ENSG00000225473ENST00000426459ENST00000431512ENSG00000236297ENST00000420064ENST00000449483ENSG00000236508ENST00000414634CIL_0000N5_0002ENSMUSG00000038094ENSMUST00000039090ENSMUST00000057018ENSMUST00000182013ENSMUST00000182094ENSMUST00000182357ENSMUST00000182573ENSMUST00000182627ENSMUST00000182676ENSMUST00000182824ENSMUSG00000048939ENSMUST00000075806ENSMUST00000142681ENSMUST00000143373ENSMUST00000152040ENSMUSG00000083141ENSMUST00000117427
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127249 ENST00000295548 N/A N/A N/A N/A N/A 0.416±0.00 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000342695 N/A N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392443 N/A N/A N/A 1.736±0.00 N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A
ENST00000400270 N/A N/A N/A N/A N/A 0.048±0.00 0.017±0.00 N/A 0.118±0.00 4.772±0.00 N/A N/A 0.054±0.00 0.235±0.00
ENST00000428352 N/A N/A 0.225±0.00 N/A 0.236±0.00 0.430±0.38 N/A 0.176±0.00 0.048±0.00 N/A N/A 0.237±0.11 0.046±0.00 0.102±0.00
ENST00000437904 N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000450950 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.007±0.00 N/A 0.091±0.00 N/A N/A
ENST00000474776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00
ENST00000489140 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490925 N/A N/A N/A 3.038±0.00 0.506±0.00 0.439±0.00 N/A 0.140±0.00 0.052±0.00 16.079±0.00 N/A 0.371±0.13 0.047±0.00 0.062±0.00
ENSG00000127252 ENST00000264735 0.154±0.00 0.054±0.00 N/A 2.063±1.10 1.909±0.00 0.267±0.00 1.797±1.31 0.332±0.00 N/A 0.152±0.00 4.981±1.58 0.180±0.04 0.174±0.12 47.127±11.92
ENST00000416012 0.102±0.00 N/A 0.295±0.00 1.910±0.00 N/A N/A N/A 0.482±0.00 N/A N/A 9.462±0.00 0.179±0.12 N/A N/A
ENSG00000187527 ENST00000342358 N/A 0.003±0.00 N/A N/A 0.567±0.00 0.044±0.00 0.011±0.00 0.028±0.00 N/A 0.027±0.00 N/A N/A N/A 0.023±0.00
ENST00000446087 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A
ENST00000488957 0.044±0.00 N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A 0.004±0.00 N/A N/A
ENST00000495496 N/A N/A N/A N/A N/A 0.139±0.00 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A
ENST00000620313 N/A N/A N/A 0.553±0.00 0.974±0.00 N/A N/A 0.135±0.00 N/A 0.078±0.00 0.695±0.00 0.043±0.00 N/A N/A
ENSG00000225473 ENST00000426459 N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A 0.775±0.00 N/A N/A
ENST00000431512 N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A 1.552±0.00 N/A N/A N/A
ENSG00000236297 ENST00000420064 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A
ENST00000449483 N/A 0.210±0.00 N/A N/A N/A 0.218±0.00 0.051±0.00 N/A N/A N/A 0.016±0.00 N/A 0.294±0.01 0.372±0.00
ENSG00000236508 ENST00000414634 N/A N/A N/A N/A N/A N/A 0.223±0.00 N/A N/A N/A 0.584±0.00 N/A N/A 0.643±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038094 ENSMUST00000039090 0.011±0.00 N/A N/A N/A 0.024±0.00 N/A N/A N/A 0.003±0.00 N/A N/A 0.132±0.00 0.018±0.00 N/A
ENSMUST00000057018 N/A N/A N/A 0.345±0.24 N/A N/A N/A 0.268±0.02 N/A N/A N/A N/A N/A 0.366±0.21
ENSMUST00000182013 0.059±0.00 N/A N/A N/A N/A 0.090±0.04 N/A 0.309±0.09 N/A 0.425±0.00 N/A 0.014±0.00 N/A 0.108±0.00
ENSMUST00000182094 0.161±0.00 N/A 0.086±0.00 N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A 4.779±0.00
ENSMUST00000182168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182357 0.023±0.00 N/A 0.008±0.00 0.252±0.11 0.066±0.04 0.145±0.03 0.022±0.00 0.484±0.18 0.028±0.02 1.137±0.18 0.022±0.01 0.134±0.11 0.015±0.00 1.197±0.18
ENSMUST00000182573 0.051±0.00 N/A N/A N/A N/A 0.041±0.00 N/A 0.094±0.00 N/A 0.499±0.16 N/A 0.088±0.00 0.010±0.00 1.002±0.00
ENSMUST00000182627 N/A N/A N/A 0.726±0.00 N/A N/A N/A 0.224±0.06 N/A 0.653±0.24 N/A 0.044±0.00 N/A 0.584±0.08
ENSMUST00000182676 N/A N/A N/A 1.006±0.00 0.119±0.07 N/A N/A N/A 0.014±0.01 N/A N/A 0.014±0.00 0.006±0.00 N/A
ENSMUST00000182694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182824 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000048939 ENSMUST00000075806 N/A N/A N/A 0.412±0.30 0.050±0.00 N/A 0.006±0.00 0.007±0.00 0.007±0.01 0.053±0.00 0.398±0.12 1.838±1.85 0.002±0.00 0.003±0.00
ENSMUST00000142681 N/A N/A N/A N/A N/A N/A 0.020±0.01 N/A 0.008±0.01 0.039±0.00 N/A 1.690±0.93 0.026±0.02 0.019±0.01
ENSMUST00000143373 N/A N/A N/A 0.775±0.00 0.131±0.00 N/A N/A 0.008±0.00 0.018±0.01 0.034±0.01 0.213±0.08 1.202±0.61 0.024±0.01 0.011±0.00
ENSMUST00000152040 0.098±0.04 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A
ENSMUSG00000083141 ENSMUST00000117427 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.153±0.00 N/A

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