C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145014-ENSG00000041802 CGP 9606 3:194587673-194672477
GeneTranscriptPositionBiotype
ENSG00000041802 (LSG1)
large 60S subunit nuclear export GTPase 1 		ENST00000265245 (LSG1-001) 194640788-194672477 protein_coding
ENST00000427461 (LSG1-003) 194659106-194672162 nonsense_mediated_decay
ENST00000437613 (LSG1-004) 194644666-194653102 protein_coding
ENST00000460584 (LSG1-007) 194642173-194649019 retained_intron
ENST00000461343 (LSG1-005) 194650784-194652813 retained_intron
ENST00000466391 (LSG1-006) 194650717-194651597 retained_intron
ENST00000475763 (LSG1-008) 194642113-194646444 retained_intron
ENST00000480853 (LSG1-002) 194670063-194672463 processed_transcript
ENSG00000272707 (RP11-534C12.1)
 ENST00000609789 (RP11-534C12.1-001) 194637505-194637664 lincRNA
CIL_0000NE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022537-ENSMUSG00000022538 CGP 10090 16:30511855-30587592
GeneTranscriptPositionBiotype
ENSMUSG00000022537 (Tmem44)
transmembrane protein 44 		ENSMUST00000089775 (Tmem44-002) 30511855-30550570 nonsense_mediated_decay
ENSMUST00000125260 (Tmem44-007) 30517730-30550539 retained_intron
ENSMUST00000125559 (Tmem44-003) 30518111-30550842 retained_intron
ENSMUST00000140402 (Tmem44-001) 30513691-30550578 protein_coding
ENSMUST00000144001 (Tmem44-004) 30513693-30550578 nonsense_mediated_decay
ENSMUST00000144491 (Tmem44-005) 30511855-30549946 retained_intron
ENSMUST00000149110 (Tmem44-006) 30513970-30540909 nonsense_mediated_decay
ENSMUST00000153380 (Tmem44-008) 30543713-30550528 processed_transcript
ENSMUSG00000022538 (Lsg1)
large subunit GTPase 1 homolog (S. cerevisiae) 		ENSMUST00000117363 (Lsg1-001) 30560494-30587592 protein_coding
ENSMUST00000123286 (Lsg1-008) 30571371-30585650 protein_coding
ENSMUST00000124858 (Lsg1-007) 30565030-30568109 retained_intron
ENSMUST00000128561 (Lsg1-006) 30573316-30587574 retained_intron
ENSMUST00000129004 (Lsg1-005) 30582253-30587539 retained_intron
ENSMUST00000143170 (Lsg1-004) 30561371-30587589 nonsense_mediated_decay
ENSMUST00000144666 (Lsg1-002) 30568013-30587592 retained_intron
ENSMUST00000150499 (Lsg1-003) 30564678-30587563 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NE_0001ENSG00000041802ENST00000265245ENST00000427461ENST00000437613ENST00000460584ENST00000461343ENST00000466391ENST00000475763ENST00000480853ENSG00000272707ENST00000609789CIL_0000NE_0002ENSMUSG00000022537ENSMUST00000089775ENSMUST00000125260ENSMUST00000125559ENSMUST00000140402ENSMUST00000144001ENSMUST00000144491ENSMUST00000149110ENSMUST00000153380ENSMUSG00000022538ENSMUST00000117363ENSMUST00000123286ENSMUST00000124858ENSMUST00000128561ENSMUST00000129004ENSMUST00000143170ENSMUST00000144666ENSMUST00000150499
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NE_0001ENSG00000041802ENST00000265245ENST00000427461ENST00000460584ENSG00000272707ENST00000609789CIL_0000NE_0002ENSMUSG00000022537ENSMUST00000089775ENSMUST00000125260ENSMUST00000125559ENSMUST00000140402ENSMUST00000144001ENSMUST00000144491ENSMUST00000149110ENSMUSG00000022538ENSMUST00000117363ENSMUST00000123286ENSMUST00000128561ENSMUST00000143170ENSMUST00000150499
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000041802 ENST00000265245 4.065±0.00 7.491±0.00 1.346±0.00 5.138±1.51 3.290±1.65 3.441±2.18 2.419±1.55 6.783±0.00 3.160±1.10 3.917±0.90 3.748±2.12 9.191±4.32 12.586±4.27 14.351±4.42
ENST00000427461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.366±0.00 N/A N/A N/A
ENST00000437613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.736±0.00 N/A N/A N/A
ENST00000461343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272707 ENST00000609789 0.800±0.00 0.573±0.00 N/A 0.207±0.00 1.442±0.00 0.411±0.00 0.188±0.00 0.183±0.00 0.082±0.00 0.158±0.00 N/A 7.411±6.90 0.830±0.00 1.326±0.59
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022537 ENSMUST00000089775 0.998±0.24 0.748±0.00 0.843±0.16 6.994±1.62 0.424±0.00 0.666±0.08 N/A 0.526±0.15 0.101±0.03 4.691±0.31 0.502±0.32 1.028±0.23 0.219±0.00 N/A
ENSMUST00000125260 2.013±0.28 1.508±0.53 0.598±0.00 11.505±3.01 1.282±0.27 1.493±0.24 1.538±0.50 1.035±0.31 0.259±0.09 8.338±0.44 N/A 2.105±0.59 0.173±0.13 0.160±0.00
ENSMUST00000125559 2.107±0.20 1.894±0.44 N/A 9.701±0.29 1.496±0.10 1.515±0.18 N/A 0.747±0.22 0.157±0.07 8.937±1.17 N/A 3.198±0.36 0.206±0.00 0.122±0.00
ENSMUST00000140402 1.336±0.45 1.468±0.18 N/A 8.949±3.29 1.424±0.20 1.676±0.49 0.931±0.00 0.932±0.08 0.255±0.12 5.083±0.28 0.491±0.00 1.747±0.36 0.738±0.55 0.278±0.00
ENSMUST00000144001 1.482±0.60 0.953±0.00 N/A N/A 0.839±0.03 N/A N/A 0.764±0.10 0.141±0.06 N/A 0.501±0.18 2.103±0.66 0.462±0.27 N/A
ENSMUST00000144491 0.987±0.30 N/A 0.456±0.00 7.058±1.04 0.662±0.04 0.577±0.03 0.944±0.22 0.607±0.19 0.118±0.06 3.766±0.09 0.422±0.00 0.554±0.03 0.230±0.11 0.073±0.00
ENSMUST00000149110 N/A N/A N/A 5.352±0.00 N/A N/A N/A N/A 0.221±0.07 N/A 0.634±0.00 N/A 1.547±0.00 N/A
ENSMUST00000153380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022538 ENSMUST00000117363 0.846±0.11 1.575±0.29 N/A 1.054±0.00 0.941±0.31 1.713±0.03 0.560±0.04 0.912±0.17 1.253±0.38 1.306±0.07 0.774±0.12 1.677±0.17 N/A 0.895±0.15
ENSMUST00000123286 N/A N/A N/A 17.621±0.00 N/A N/A N/A N/A N/A N/A N/A 31.573±0.00 28.123±15.07 54.546±0.00
ENSMUST00000124858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128561 N/A N/A N/A N/A 6.538±1.74 5.258±0.69 N/A N/A 5.769±1.07 6.503±1.42 N/A 10.233±1.08 21.972±6.48 5.323±0.82
ENSMUST00000129004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143170 4.323±1.24 7.411±1.53 3.074±0.08 5.022±3.02 5.050±1.54 3.012±0.75 2.126±0.43 5.106±0.94 3.892±1.43 4.392±0.64 1.937±0.70 9.739±3.48 12.778±9.24 7.181±4.82
ENSMUST00000144666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150499 2.098±1.08 2.061±0.05 1.590±0.10 2.132±0.26 2.745±0.37 1.227±0.10 0.783±0.13 1.133±0.05 1.931±0.75 1.995±0.34 1.106±0.44 3.632±1.35 2.691±0.74 2.833±2.03

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