C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120158-ENSG00000096968 CGP 9606 9:4792834-5128183
GeneTranscriptPositionBiotype
ENSG00000096968 (JAK2)
Janus kinase 2 		ENST00000381652 (JAK2-001) 4985245-5128183 protein_coding
ENST00000476574 (JAK2-002) 4985033-5022065 processed_transcript
ENST00000487310 (JAK2-004) 5125965-5126974 processed_transcript
ENSG00000120158 (RCL1)
RNA terminal phosphate cyclase-like 1 		ENST00000381728 (RCL1-006) 4839518-4860292 protein_coding
ENST00000381730 (RCL1-002) 4836726-4860472 protein_coding
ENST00000381732 (RCL1-004) 4792976-4827337 protein_coding
ENST00000381750 (RCL1-001) 4792869-4861064 protein_coding
ENST00000441844 (RCL1-007) 4839777-4849550 protein_coding
ENST00000442869 (RCL1-003) 4792980-4860173 protein_coding
ENST00000445485 (RCL1-008) 4860454-4885917 processed_transcript
ENST00000448872 (RCL1-201) 4839769-4861075 protein_coding
ENST00000473230 (RCL1-005) 4793087-4841357 processed_transcript
ENST00000615460 (RCL1-202) 4792834-4861075 protein_coding
ENST00000623584 (RCL1-203) 4792834-4861075 protein_coding
ENSG00000182347 (PDSS1P1)
prenyl (decaprenyl) diphosphate synthase, subunit 1 pseudogene 1 		ENST00000422953 (PDSS1P1-001) 5084999-5086112 processed_pseudogene
ENSG00000220937 (HNRNPA1P41)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 41 		ENST00000397777 (HNRNPA1P41-001) 4944670-4945902 processed_pseudogene
ENSG00000224083 (RP11-39K24.4)
 ENST00000429111 (RP11-39K24.4-001) 5096666-5098193 unprocessed_pseudogene
ENSG00000227730 (MTND6P5)
MT-ND6 pseudogene 5 		ENST00000448266 (MTND6P5-001) 5091093-5091604 unprocessed_pseudogene
ENSG00000228097 (RP11-39K24.12)
 ENST00000428071 (RP11-39K24.12-001) 5099560-5100229 unprocessed_pseudogene
ENSG00000228166 (MTND1P11)
MT-ND1 pseudogene 11 		ENST00000456661 (MTND1P11-001) 5094139-5095014 unprocessed_pseudogene
ENSG00000230225 (MTND5P14)
MT-ND5 pseudogene 14 		ENST00000441481 (MTND5P14-001) 5109496-5110762 unprocessed_pseudogene
ENSG00000233186 (KLF4P1)
Kruppel-like factor 4 (gut) pseudogene 1 		ENST00000412782 (KLF4P1-001) 4803788-4804972 processed_pseudogene
ENSG00000234534 (CSNK1G2P1)
casein kinase 1, gamma 2 pseudogene 1 		ENST00000442675 (CSNK1G2P1-002) 5040945-5041940 processed_pseudogene
ENSG00000235917 (RP11-39K24.14)
 ENST00000431069 (RP11-39K24.14-001) 5098341-5099325 unprocessed_pseudogene
ENSG00000236254 (MTND4P14)
MT-ND4 pseudogene 14 		ENST00000435799 (MTND4P14-001) 5107937-5109290 unprocessed_pseudogene
ENSG00000236567 (TCF3P1)
transcription factor 3 pseudogene 1 		ENST00000423021 (TCF3P1-001) 5110913-5112849 processed_pseudogene
ENSG00000237711 (RP11-39K24.13)
 ENST00000455103 (RP11-39K24.13-001) 5100236-5101009 unprocessed_pseudogene
ENSG00000238362 (AL158147.1)
 ENST00000459392 (AL158147.1-201) 4968097-4968185 miRNA
ENSG00000254017 (IGHEP2)
immunoglobulin heavy constant epsilon P2 (pseudogene) 		ENST00000519308 (IGHEP2-001) 5113549-5114804 IG_C_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0000NF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024785-ENSMUSG00000024789 CGP 10090 19:29101375-29313080
GeneTranscriptPositionBiotype
ENSMUSG00000024785 (Rcl1)
RNA terminal phosphate cyclase-like 1 		ENSMUST00000064393 (Rcl1-201) 29101375-29143843 protein_coding
ENSMUSG00000024789 (Jak2)
Janus kinase 2 		ENSMUST00000025705 (Jak2-201) 29251828-29313080 protein_coding
ENSMUST00000065796 (Jak2-202) 29251828-29313080 protein_coding
ENSMUSG00000065556 (Mir101b)
microRNA 101b 		ENSMUST00000083622 (Mir101b-201) 29135279-29135375 miRNA
ENSMUSG00000068466 (Gm5518)
predicted gene 5518 		ENSMUST00000084171 (Gm5518-201) 29160118-29160765 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NF_0001ENSG00000096968ENST00000381652ENST00000476574ENST00000487310ENSG00000120158ENST00000381728ENST00000381730ENST00000381732ENST00000381750ENST00000441844ENST00000442869ENST00000445485ENST00000448872ENST00000473230ENST00000615460ENST00000623584ENSG00000182347ENST00000422953ENSG00000220937ENST00000397777ENSG00000224083ENST00000429111ENSG00000227730ENST00000448266ENSG00000228097ENST00000428071ENSG00000228166ENST00000456661ENSG00000230225ENST00000441481ENSG00000233186ENST00000412782ENSG00000234534ENST00000442675ENSG00000235917ENST00000431069ENSG00000236254ENST00000435799ENSG00000236567ENST00000423021ENSG00000237711ENST00000455103ENSG00000238362ENST00000459392ENSG00000254017ENST00000519308CIL_0000NF_0002ENSMUSG00000024785ENSMUST00000064393ENSMUSG00000024789ENSMUST00000025705ENSMUST00000065796ENSMUSG00000065556ENSMUST00000083622ENSMUSG00000068466ENSMUST00000084171
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NF_0001ENSG00000096968ENST00000381652ENST00000487310ENSG00000120158ENST00000381728ENST00000381730ENST00000381750ENST00000442869ENST00000445485ENST00000448872ENST00000615460ENSG00000182347ENST00000422953ENSG00000220937ENST00000397777ENSG00000224083ENST00000429111ENSG00000227730ENST00000448266ENSG00000228097ENST00000428071ENSG00000228166ENST00000456661ENSG00000230225ENST00000441481ENSG00000233186ENST00000412782ENSG00000234534ENST00000442675ENSG00000235917ENST00000431069ENSG00000236254ENST00000435799ENSG00000236567ENST00000423021ENSG00000237711ENST00000455103ENSG00000238362ENST00000459392ENSG00000254017ENST00000519308CIL_0000NF_0002ENSMUSG00000024785ENSMUST00000064393ENSMUSG00000024789ENSMUST00000025705ENSMUST00000065796ENSMUSG00000065556ENSMUST00000083622ENSMUSG00000068466ENSMUST00000084171
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000096968 ENST00000381652 4.178±0.00 3.797±0.00 0.493±0.00 2.476±0.94 3.696±1.17 1.963±0.00 6.641±0.00 2.685±0.00 2.282±1.81 7.536±3.60 1.453±0.06 1.695±1.00 1.256±0.52 5.147±0.57
ENST00000476574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.019±0.00 N/A N/A
ENSG00000120158 ENST00000381728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.255±0.00
ENST00000381730 N/A N/A N/A N/A N/A N/A N/A 9.700±0.00 N/A N/A N/A N/A N/A N/A
ENST00000381732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000381750 6.999±0.00 8.532±0.00 0.829±0.00 1.824±0.89 3.302±1.88 2.531±0.94 1.464±1.15 6.430±0.00 3.608±3.21 2.378±0.65 1.646±0.91 5.982±2.66 8.705±2.51 5.406±1.01
ENST00000441844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.773±0.00
ENST00000445485 N/A N/A 0.582±0.00 1.018±0.00 N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000448872 N/A N/A N/A N/A N/A 0.799±0.00 0.456±0.00 11.559±0.00 22.865±0.00 N/A N/A N/A N/A N/A
ENST00000473230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A N/A 1.331±0.00
ENST00000623584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182347 ENST00000422953 N/A N/A N/A 0.224±0.00 0.062±0.00 0.088±0.00 0.370±0.00 N/A N/A 0.933±0.00 0.041±0.00 0.025±0.00 N/A 0.139±0.06
ENSG00000220937 ENST00000397777 0.058±0.00 0.106±0.00 N/A 0.093±0.00 0.015±0.00 0.097±0.00 0.014±0.00 0.030±0.00 0.080±0.00 0.015±0.00 0.158±0.12 0.015±0.00 0.021±0.00 0.107±0.04
ENSG00000224083 ENST00000429111 0.008±0.00 0.106±0.00 0.942±0.00 N/A 1.005±0.98 0.875±0.00 0.154±0.11 0.493±0.46 0.901±0.00 0.289±0.22 0.030±0.01 0.062±0.05 0.038±0.00 1.117±0.97
ENSG00000227730 ENST00000448266 N/A 0.488±0.00 0.362±0.00 0.242±0.00 0.227±0.00 N/A 0.244±0.19 0.018±0.00 1.293±0.00 0.506±0.43 N/A 0.247±0.14 0.310±0.00 0.481±0.24
ENSG00000228097 ENST00000428071 N/A 0.127±0.00 1.387±0.00 0.230±0.00 0.158±0.08 1.542±0.00 0.306±0.25 N/A 0.267±0.25 N/A N/A 0.116±0.00 0.414±0.00 0.971±0.85
ENSG00000228166 ENST00000456661 0.041±0.00 0.276±0.00 N/A 0.084±0.07 0.013±0.00 0.428±0.00 0.171±0.00 N/A 0.147±0.13 N/A N/A N/A 0.058±0.02 1.871±1.82
ENSG00000230225 ENST00000441481 0.019±0.00 0.098±0.00 0.210±0.00 0.084±0.00 0.136±0.00 N/A 0.053±0.00 0.035±0.03 0.119±0.00 0.364±0.00 0.397±0.00 0.448±0.44 0.195±0.00 0.875±0.75
ENSG00000233186 ENST00000412782 N/A 0.429±0.00 0.065±0.00 0.082±0.00 N/A N/A N/A N/A 0.090±0.05 N/A 0.339±0.00 0.452±0.54 N/A N/A
ENSG00000234534 ENST00000442675 N/A 0.245±0.00 N/A N/A 0.665±0.60 0.750±0.00 0.029±0.00 N/A 0.481±0.00 N/A 0.505±0.00 0.176±0.11 N/A 0.597±0.00
ENSG00000235917 ENST00000431069 N/A 0.232±0.00 0.117±0.00 0.109±0.08 0.968±0.00 0.323±0.00 0.156±0.06 0.060±0.00 0.193±0.00 1.123±1.06 1.075±0.00 N/A 0.119±0.00 0.645±0.41
ENSG00000236254 ENST00000435799 N/A 0.251±0.00 0.365±0.00 0.056±0.00 0.168±0.07 0.050±0.00 0.151±0.01 0.103±0.00 0.230±0.22 0.852±0.00 N/A 0.304±0.29 0.049±0.00 1.664±1.50
ENSG00000236567 ENST00000423021 0.068±0.00 0.299±0.00 N/A 0.163±0.14 0.032±0.00 0.190±0.00 0.336±0.07 0.065±0.00 0.751±0.00 0.234±0.19 N/A 0.057±0.02 N/A 1.313±0.75
ENSG00000237711 ENST00000455103 N/A 0.292±0.00 0.239±0.00 0.129±0.00 0.335±0.23 1.478±0.00 0.166±0.04 0.581±0.57 0.267±0.25 N/A 0.934±0.00 0.375±0.49 N/A 0.411±0.26
ENSG00000238362 ENST00000459392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.029±0.00 N/A N/A
ENSG00000254017 ENST00000519308 N/A 0.740±0.00 0.052±0.00 N/A 0.264±0.22 0.125±0.00 0.187±0.00 0.309±0.00 0.162±0.11 0.567±0.00 N/A 0.241±0.00 0.044±0.00 0.763±0.33
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024785 ENSMUST00000064393 15.099±2.80 36.807±1.39 10.179±0.66 6.122±0.76 13.116±5.22 6.684±1.41 2.244±0.48 7.703±0.58 28.281±6.40 7.514±0.73 2.997±0.79 15.652±5.09 18.997±9.80 2.031±0.67
ENSMUSG00000024789 ENSMUST00000025705 N/A N/A N/A 5.034±0.00 1.443±0.00 N/A N/A N/A N/A N/A 2.755±0.00 4.617±2.31 5.560±0.73 N/A
ENSMUST00000065796 9.901±4.83 4.920±0.55 15.865±0.61 9.434±2.05 8.219±2.69 7.176±0.92 2.921±0.30 4.881±0.21 5.858±5.07 8.158±0.83 9.938±2.05 9.008±1.63 8.342±2.58 1.013±0.36
ENSMUSG00000065556 ENSMUST00000083622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.103±0.00 N/A
ENSMUSG00000068466 ENSMUST00000084171 0.134±0.00 N/A 0.504±0.42 0.343±0.21 0.289±0.09 0.150±0.00 0.067±0.00 0.136±0.00 0.470±0.62 0.086±0.00 0.072±0.01 0.329±0.18 0.127±0.07 0.134±0.00

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