C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000080608-ENSG00000080298 CGP 9606 9:2720469-3526004
GeneTranscriptPositionBiotype
ENSG00000080298 (RFX3)
regulatory factor X, 3 (influences HLA class II expression) 		ENST00000302303 (RFX3-201) 3270930-3489487 protein_coding
ENST00000358730 (RFX3-005) 3247037-3395596 protein_coding
ENST00000381984 (RFX3-001) 3344732-3395588 protein_coding
ENST00000382004 (RFX3-006) 3218297-3525983 protein_coding
ENST00000420720 (RFX3-010) 3323961-3346764 protein_coding
ENST00000442560 (RFX3-009) 3323961-3346764 protein_coding
ENST00000449190 (RFX3-004) 3330317-3526004 protein_coding
ENST00000449234 (RFX3-007) 3247514-3257199 protein_coding
ENST00000451859 (RFX3-002) 3301543-3489428 protein_coding
ENST00000457373 (RFX3-003) 3293084-3489416 protein_coding
ENST00000458034 (RFX3-008) 3257002-3270738 protein_coding
ENST00000617270 (RFX3-202) 3218302-3526001 protein_coding
ENSG00000080608 (KIAA0020)
KIAA0020 		ENST00000382032 (KIAA0020-003) 2804167-2807974 retained_intron
ENST00000397885 (KIAA0020-001) 2804164-2844241 protein_coding
ENST00000469168 (KIAA0020-002) 2828475-2829925 processed_transcript
ENST00000490444 (KIAA0020-004) 2720469-2807830 nonsense_mediated_decay
ENSG00000168263 (KCNV2)
potassium channel, subfamily V, member 2 		ENST00000382082 (KCNV2-001) 2717502-2730037 protein_coding
ENSG00000215297 (RP11-62E14.2)
 ENST00000438600 (RP11-62E14.2-001) 3364329-3364792 processed_pseudogene
ENSG00000227835 (CARM1P1)
coactivator-associated arginine methyltransferase 1 pseudogene 1 		ENST00000426329 (CARM1P1-001) 2907073-3053408 transcribed_unprocessed_pseudogene
ENST00000492533 (CARM1P1-003) 2943507-2949586 processed_transcript
ENST00000497195 (CARM1P1-002) 2919099-2943654 processed_transcript
ENST00000515723 (CARM1P1-004) 2992062-3014177 processed_transcript
ENSG00000229184 (ATP5HP2)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 2 		ENST00000433885 (ATP5HP2-001) 2900320-2900804 processed_pseudogene
ENSG00000236496 (GPS2P1)
G protein pathway suppressor 2 pseudogene 1 		ENST00000411761 (GPS2P1-001) 2875442-2876427 processed_pseudogene
ENSG00000236511 (LINC01231)
long intergenic non-protein coding RNA 1231 		ENST00000452746 (LINC01231-001) 3181589-3198517 lincRNA
ENSG00000279745 (AL365202.1)
 ENST00000624522 (AL365202.1-201) 3452305-3453987 protein_coding
CIL_0000NH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041360-ENSMUSG00000040929 CGP 10090 19:27388702-28011166
GeneTranscriptPositionBiotype
ENSMUSG00000040929 (Rfx3)
regulatory factor X, 3 (influences HLA class II expression) 		ENSMUST00000046898 (Rfx3-003) 27766441-28011048 protein_coding
ENSMUST00000165566 (Rfx3-201) 27761721-27982948 protein_coding
ENSMUST00000172498 (Rfx3-006) 27768141-27836846 processed_transcript
ENSMUST00000172907 (Rfx3-004) 27768318-28011045 protein_coding
ENSMUST00000173161 (Rfx3-002) 27805143-28011166 retained_intron
ENSMUST00000173863 (Rfx3-005) 27768455-27900895 nonsense_mediated_decay
ENSMUST00000174420 (Rfx3-007) 27867515-28010790 protein_coding
ENSMUST00000174850 (Rfx3-001) 27768139-28011140 protein_coding
ENSMUSG00000041360 (D19Bwg1357e)
DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed 		ENSMUST00000076219 (D19Bwg1357e-201) 27388702-27429820 protein_coding
ENSMUSG00000092182 (Gm20407)
predicted gene 20407 		ENSMUST00000172891 (Gm20407-001) 27994197-27995693 processed_transcript
ENSMUSG00000092617 (Gm8412)
predicted gene 8412 		ENSMUST00000077493 (Gm8412-001) 27858058-27858497 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NH_0001ENSG00000080298ENST00000302303ENST00000358730ENST00000381984ENST00000382004ENST00000420720ENST00000442560ENST00000449190ENST00000449234ENST00000451859ENST00000457373ENST00000458034ENST00000617270ENSG00000080608ENST00000382032ENST00000397885ENST00000469168ENST00000490444ENSG00000168263ENST00000382082ENSG00000215297ENST00000438600ENSG00000227835ENST00000426329ENST00000492533ENST00000497195ENST00000515723ENSG00000229184ENST00000433885ENSG00000236496ENST00000411761ENSG00000236511ENST00000452746ENSG00000279745ENST00000624522CIL_0000NH_0002ENSMUSG00000040929ENSMUST00000046898ENSMUST00000165566ENSMUST00000172498ENSMUST00000172907ENSMUST00000173161ENSMUST00000173863ENSMUST00000174420ENSMUST00000174850ENSMUSG00000041360ENSMUST00000076219ENSMUSG00000092182ENSMUST00000172891ENSMUSG00000092617ENSMUST00000077493
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NH_0001ENSG00000080298ENST00000302303ENST00000358730ENST00000382004ENST00000449190ENST00000449234ENST00000457373ENST00000458034ENST00000617270ENSG00000080608ENST00000382032ENST00000397885ENSG00000168263ENST00000382082ENSG00000215297ENST00000438600ENSG00000227835ENST00000426329ENST00000492533ENST00000497195ENST00000515723ENSG00000229184ENST00000433885ENSG00000236496ENST00000411761ENSG00000236511ENST00000452746ENSG00000279745ENST00000624522CIL_0000NH_0002ENSMUSG00000040929ENSMUST00000046898ENSMUST00000165566ENSMUST00000172498ENSMUST00000172907ENSMUST00000173863ENSMUST00000174850ENSMUSG00000041360ENSMUST00000076219ENSMUSG00000092182ENSMUST00000172891ENSMUSG00000092617ENSMUST00000077493
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080298 ENST00000302303 N/A N/A N/A N/A N/A N/A N/A N/A 2.258±0.00 N/A 0.876±0.00 N/A N/A 5.118±0.00
ENST00000358730 N/A N/A N/A N/A N/A 0.483±0.00 N/A N/A N/A 1.698±0.00 N/A 0.827±0.28 0.166±0.00 N/A
ENST00000381984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000382004 N/A 0.291±0.00 0.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449190 N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000449234 N/A N/A N/A N/A N/A N/A N/A 1.655±0.00 N/A N/A 1.438±0.00 N/A N/A N/A
ENST00000451859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457373 N/A N/A N/A N/A 2.962±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.036±0.00
ENST00000617270 0.708±0.00 0.829±0.00 0.207±0.00 1.657±0.32 0.758±0.45 0.908±0.00 0.251±0.00 0.293±0.00 0.108±0.00 2.070±0.00 0.863±0.79 0.445±0.24 0.260±0.04 0.943±0.39
ENSG00000080608 ENST00000382032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.740±0.00 N/A N/A N/A
ENST00000397885 5.397±0.00 8.992±0.00 2.322±0.00 2.028±0.26 5.754±0.12 4.053±2.31 1.996±0.75 4.878±3.68 3.884±0.34 5.340±2.28 2.090±1.73 9.214±4.92 5.586±1.84 10.101±0.80
ENST00000469168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168263 ENST00000382082 0.021±0.00 0.045±0.00 0.111±0.00 0.130±0.10 0.025±0.00 N/A 0.061±0.02 0.082±0.01 N/A 0.059±0.00 N/A 0.117±0.07 0.030±0.01 2.918±0.48
ENSG00000215297 ENST00000438600 0.025±0.00 0.224±0.00 2.165±0.00 0.108±0.06 0.986±0.00 0.276±0.14 0.066±0.00 N/A 0.819±0.80 0.367±0.35 N/A 0.773±0.72 N/A 0.022±0.00
ENSG00000227835 ENST00000426329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00
ENST00000492533 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A N/A 0.431±0.01
ENST00000497195 N/A N/A N/A 0.969±0.00 N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A 0.232±0.00
ENST00000515723 N/A N/A N/A N/A 0.065±0.00 N/A 0.029±0.00 0.032±0.00 0.029±0.00 N/A N/A 0.135±0.00 N/A 0.089±0.00
ENSG00000229184 ENST00000433885 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A 0.048±0.00 0.050±0.00 0.096±0.00 0.030±0.00 N/A 0.039±0.01
ENSG00000236496 ENST00000411761 1.612±0.00 1.766±0.00 N/A 2.964±0.00 N/A 1.224±0.00 1.635±0.00 4.548±0.00 0.017±0.00 0.867±0.00 0.083±0.00 0.368±0.42 0.201±0.08 3.975±2.98
ENSG00000236511 ENST00000452746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A 0.138±0.05
ENSG00000279745 ENST00000624522 0.751±0.00 1.500±0.00 N/A 1.352±0.00 1.183±0.00 0.487±0.00 0.790±0.00 1.595±0.00 0.247±0.00 1.187±0.00 0.098±0.00 1.523±1.00 N/A 0.566±0.30
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040929 ENSMUST00000046898 N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165566 0.069±0.00 0.478±0.14 N/A 3.139±0.66 0.655±0.09 0.404±0.13 N/A 0.776±0.10 0.131±0.01 N/A 0.098±0.05 1.471±0.67 0.288±0.16 0.567±0.40
ENSMUST00000172498 N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A 1.228±0.00 N/A N/A
ENSMUST00000172907 0.449±0.25 N/A N/A N/A 0.357±0.00 0.531±0.22 0.251±0.05 0.452±0.09 0.132±0.00 0.471±0.00 N/A 1.317±0.26 0.565±0.00 8.182±2.26
ENSMUST00000173161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173863 N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A 0.276±0.00 N/A N/A 2.552±0.39 N/A 4.790±0.73
ENSMUST00000174420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174850 0.504±0.00 0.304±0.00 N/A 4.696±0.00 N/A 0.154±0.00 0.152±0.00 N/A N/A N/A N/A 1.175±0.19 N/A 5.909±0.45
ENSMUSG00000041360 ENSMUST00000076219 7.059±2.60 4.051±1.72 7.280±0.94 8.326±3.49 3.750±1.94 4.563±0.63 3.727±0.54 5.185±0.15 4.332±1.65 6.367±0.62 2.375±0.34 13.249±5.11 18.164±13.52 2.830±2.69
ENSMUSG00000092182 ENSMUST00000172891 0.119±0.00 N/A N/A N/A N/A 0.309±0.00 0.153±0.04 N/A 0.033±0.00 0.194±0.00 N/A N/A N/A 0.113±0.05
ENSMUSG00000092617 ENSMUST00000077493 0.135±0.02 0.230±0.00 0.028±0.00 0.292±0.12 N/A N/A 0.120±0.00 N/A 0.036±0.00 0.195±0.07 N/A 0.601±0.35 0.041±0.01 0.333±0.00

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