C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000O4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088387-ENSG00000134882 CGP 9606 13:98793487-99386434
GeneTranscriptPositionBiotype
ENSG00000088387 (DOCK9)
dedicator of cytokinesis 9 		ENST00000339416 (DOCK9-201) 98793487-99086406 protein_coding
ENST00000340449 (DOCK9-009) 98809309-98847684 protein_coding
ENST00000376460 (DOCK9-001) 98793487-98977990 protein_coding
ENST00000400228 (DOCK9-010) 98793487-98831793 protein_coding
ENST00000419908 (DOCK9-013) 98800288-98829455 protein_coding
ENST00000427887 (DOCK9-002) 98922051-99086625 protein_coding
ENST00000442173 (DOCK9-202) 98793487-98978084 protein_coding
ENST00000448493 (DOCK9-203) 98793487-99086406 protein_coding
ENST00000449796 (DOCK9-007) 98831396-98855984 protein_coding
ENST00000450257 (DOCK9-006) 98831774-98850080 protein_coding
ENST00000451563 (DOCK9-012) 98807661-98829366 protein_coding
ENST00000461998 (DOCK9-008) 98860181-98863548 processed_transcript
ENST00000472874 (DOCK9-005) 98845948-98860476 processed_transcript
ENST00000473165 (DOCK9-004) 98888135-98888685 processed_transcript
ENST00000479769 (DOCK9-003) 98955435-99086393 processed_transcript
ENST00000481051 (DOCK9-011) 98810259-98829496 processed_transcript
ENSG00000125245 (GPR18)
G protein-coupled receptor 18 		ENST00000340807 (GPR18-001) 99254732-99261744 protein_coding
ENST00000397470 (GPR18-201) 99254714-99258428 protein_coding
ENST00000397473 (GPR18-202) 99254714-99258428 protein_coding
ENST00000416594 (GPR18-002) 99255579-99258374 protein_coding
ENSG00000169508 (GPR183)
G protein-coupled receptor 183 		ENST00000376414 (GPR183-001) 99294530-99307405 protein_coding
ENSG00000201793 (RN7SKP9)
RNA, 7SK small nuclear pseudogene 9 		ENST00000364923 (RN7SKP9-201) 99205708-99206006 misc_RNA
ENSG00000207719 (MIR623)
microRNA 623 		ENST00000384986 (MIR623-201) 99356131-99356228 miRNA
ENSG00000218502 (H2AFZP3)
H2A histone family, member Z pseudogene 3 		ENST00000394213 (H2AFZP3-001) 99215372-99215758 processed_pseudogene
ENSG00000228808 (HMGB3P4)
high mobility group box 3 pseudogene 4 		ENST00000428776 (HMGB3P4-001) 99372173-99372686 processed_pseudogene
ENSG00000228889 (UBAC2-AS1)
UBAC2 antisense RNA 1 		ENST00000426037 (UBAC2-AS1-001) 99196377-99200710 lincRNA
ENST00000445737 (UBAC2-AS1-002) 99196377-99200710 lincRNA
ENSG00000229918 (DOCK9-AS1)
DOCK9 antisense RNA 1 		ENST00000439367 (DOCK9-AS1-001) 98832084-98834629 antisense
ENSG00000230871 (RPS6P23)
ribosomal protein S6 pseudogene 23 		ENST00000413224 (RPS6P23-001) 99173593-99174490 processed_pseudogene
ENSG00000231981 (RPL7L1P12)
ribosomal protein L7-like 1 pseudogene 12 		ENST00000417594 (RPL7L1P12-001) 98949719-98950447 processed_pseudogene
ENSG00000234005 (GAPDHP22)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 22 		ENST00000491037 (GAPDHP22-001) 99190579-99190991 processed_pseudogene
ENSG00000260992 (DOCK9-AS2)
DOCK9 antisense RNA 2 (head to head) 		ENST00000562781 (DOCK9-AS2-001) 99087819-99088625 antisense
ENSG00000275919 (RP11-155N3.4)
 ENST00000619393 (RP11-155N3.4-001) 98871742-98872005 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000O4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025558-ENSMUSG00000041765 CGP 10090 14:121542039-122021034
GeneTranscriptPositionBiotype
ENSMUSG00000025558 (Dock9)
dedicator of cytokinesis 9 		ENSMUST00000040700 (Dock9-201) 121542039-121698417 protein_coding
ENSMUST00000100299 (Dock9-202) 121542039-121797734 protein_coding
ENSMUSG00000041765 (Ubac2)
ubiquitin associated domain containing 2 		ENSMUST00000039803 (Ubac2-201) 121878606-122021034 protein_coding
ENSMUSG00000050350 (Gpr18)
G protein-coupled receptor 18 		ENSMUST00000055475 (Gpr18-201) 121911435-121915774 protein_coding
ENSMUSG00000051212 (Gpr183)
G protein-coupled receptor 183 		ENSMUST00000049872 (Gpr183-201) 121952331-121965193 protein_coding
ENSMUSG00000102112 (RP23-293N22.1)
RIKEN cDNA 1810041H14 gene 		ENSMUST00000185880 (RP23-293N22.1-001) 121876859-121879409 antisense
ENSMUST00000187218 (RP23-293N22.1-003) 121876725-121878270 antisense
ENSMUST00000187773 (RP23-293N22.1-002) 121876811-121878504 antisense

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000O4_0001ENSG00000088387ENST00000339416ENST00000340449ENST00000376460ENST00000400228ENST00000419908ENST00000427887ENST00000442173ENST00000448493ENST00000449796ENST00000450257ENST00000451563ENST00000461998ENST00000472874ENST00000473165ENST00000479769ENST00000481051ENSG00000125245ENST00000340807ENST00000397470ENST00000397473ENST00000416594ENSG00000169508ENST00000376414ENSG00000201793ENST00000364923ENSG00000207719ENST00000384986ENSG00000218502ENST00000394213ENSG00000228808ENST00000428776ENSG00000228889ENST00000426037ENST00000445737ENSG00000229918ENST00000439367ENSG00000230871ENST00000413224ENSG00000231981ENST00000417594ENSG00000234005ENST00000491037ENSG00000260992ENST00000562781ENSG00000275919ENST00000619393CIL_0000O4_0002ENSMUSG00000025558ENSMUST00000040700ENSMUST00000100299ENSMUSG00000041765ENSMUST00000039803ENSMUSG00000050350ENSMUST00000055475ENSMUSG00000051212ENSMUST00000049872ENSMUSG00000102112ENSMUST00000185880ENSMUST00000187218ENSMUST00000187773
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000O4_0001ENSG00000088387ENST00000339416ENST00000376460ENST00000400228ENST00000442173ENST00000448493ENSG00000125245ENST00000340807ENST00000397470ENST00000397473ENST00000416594ENSG00000169508ENST00000376414ENSG00000201793ENST00000364923ENSG00000207719ENST00000384986ENSG00000218502ENST00000394213ENSG00000228808ENST00000428776ENSG00000228889ENST00000426037ENST00000445737ENSG00000229918ENST00000439367ENSG00000230871ENST00000413224ENSG00000231981ENST00000417594ENSG00000234005ENST00000491037ENSG00000260992ENST00000562781ENSG00000275919ENST00000619393CIL_0000O4_0002ENSMUSG00000025558ENSMUST00000040700ENSMUST00000100299ENSMUSG00000041765ENSMUST00000039803ENSMUSG00000050350ENSMUST00000055475ENSMUSG00000051212ENSMUST00000049872ENSMUSG00000102112ENSMUST00000185880ENSMUST00000187218ENSMUST00000187773
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088387 ENST00000339416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A
ENST00000340449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000376460 N/A N/A N/A 3.253±1.64 N/A N/A N/A N/A N/A N/A N/A N/A 8.132±0.00 N/A
ENST00000400228 31.229±0.00 10.377±0.00 N/A 6.000±0.00 9.569±0.00 9.612±0.00 4.355±0.00 7.719±0.00 2.055±0.00 9.778±0.00 0.805±0.00 8.267±4.41 12.367±5.38 5.625±1.61
ENST00000419908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442173 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.871±0.00 N/A N/A N/A N/A
ENST00000448493 N/A N/A N/A 2.417±0.00 N/A N/A 3.382±0.00 N/A 0.630±0.00 2.999±0.00 0.420±0.00 5.296±0.00 N/A 0.752±0.00
ENST00000449796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125245 ENST00000340807 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.11 N/A 0.027±0.00 N/A 1.096±0.00
ENST00000397470 N/A 1.662±0.00 N/A 0.016±0.00 N/A 0.161±0.00 N/A N/A N/A 1.544±1.38 0.041±0.00 0.248±0.12 0.138±0.10 N/A
ENST00000397473 N/A 0.405±0.00 N/A N/A N/A N/A N/A 0.123±0.00 0.055±0.00 N/A N/A 0.255±0.00 N/A 3.711±1.70
ENST00000416594 N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 0.043±0.00 N/A N/A N/A 0.048±0.00 N/A
ENSG00000169508 ENST00000376414 2.224±0.00 15.396±0.00 1.924±0.00 1.532±0.20 4.530±2.27 4.733±1.54 1.426±0.93 1.375±0.09 1.526±1.10 7.820±2.32 0.314±0.09 1.951±0.95 5.751±1.66 1.202±0.35
ENSG00000201793 ENST00000364923 N/A 0.714±0.00 7.137±0.00 7.022±6.72 5.124±4.93 8.908±0.00 1.493±1.41 13.591±0.00 11.987±0.00 18.301±0.00 5.582±0.00 4.018±3.17 N/A 0.277±0.00
ENSG00000207719 ENST00000384986 0.816±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.333±0.00 N/A N/A
ENSG00000218502 ENST00000394213 0.092±0.00 0.582±0.00 N/A N/A 0.099±0.00 0.194±0.10 N/A 0.050±0.00 0.043±0.00 N/A N/A 0.218±0.02 0.098±0.00 0.145±0.06
ENSG00000228808 ENST00000428776 0.030±0.00 0.390±0.00 3.023±0.00 0.106±0.04 0.632±0.60 0.513±0.30 0.074±0.02 0.033±0.00 1.730±0.00 0.771±0.58 N/A 0.257±0.11 0.182±0.00 0.254±0.00
ENSG00000228889 ENST00000426037 0.271±0.00 0.588±0.00 N/A 0.246±0.01 0.304±0.00 0.225±0.00 0.209±0.00 0.318±0.00 0.236±0.00 N/A N/A 0.855±0.49 0.446±0.03 1.662±0.03
ENST00000445737 N/A N/A 0.046±0.00 N/A 0.162±0.03 N/A N/A 0.041±0.00 0.260±0.00 0.107±0.00 0.400±0.27 0.536±0.46 N/A 1.373±1.05
ENSG00000229918 ENST00000439367 N/A N/A N/A 0.557±0.00 N/A 0.177±0.00 0.033±0.00 1.917±0.00 0.182±0.05 1.378±0.00 N/A 0.261±0.00 0.253±0.00 N/A
ENSG00000230871 ENST00000413224 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000231981 ENST00000417594 N/A 0.151±0.00 N/A 0.140±0.03 0.643±0.00 0.368±0.00 0.088±0.00 0.019±0.00 0.185±0.00 0.921±0.89 N/A 0.072±0.04 0.099±0.00 N/A
ENSG00000234005 ENST00000491037 N/A 0.385±0.00 N/A 0.110±0.00 N/A N/A 0.086±0.00 N/A 0.167±0.00 N/A N/A 0.097±0.02 N/A 0.427±0.06
ENSG00000260992 ENST00000562781 1.845±0.00 1.312±0.00 N/A 1.435±1.11 1.129±0.00 0.307±0.18 0.271±0.19 0.500±0.10 0.221±0.03 0.989±0.36 N/A 1.150±0.39 1.218±0.14 4.221±0.84
ENSG00000275919 ENST00000619393 0.860±0.00 N/A N/A N/A 0.382±0.00 0.347±0.00 N/A N/A N/A N/A N/A N/A 1.479±0.00 0.107±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025558 ENSMUST00000040700 2.740±1.11 N/A 6.885±4.32 2.818±1.37 2.270±0.70 3.301±0.00 1.247±0.08 6.916±2.09 0.550±0.21 5.940±1.27 0.941±0.20 6.804±2.88 7.078±4.06 0.292±0.05
ENSMUST00000100299 3.673±1.88 1.161±0.24 6.923±1.06 6.027±1.82 3.392±1.60 1.863±0.63 3.090±0.85 2.872±1.01 0.443±0.23 16.396±2.43 2.559±1.26 7.068±2.59 4.085±1.52 0.183±0.01
ENSMUSG00000041765 ENSMUST00000039803 24.494±3.28 50.581±6.35 16.479±0.62 13.422±7.18 30.931±8.51 36.373±2.98 16.890±2.14 34.910±2.93 17.499±6.81 25.613±1.07 13.110±0.51 28.272±10.44 22.091±6.58 36.826±17.06
ENSMUSG00000050350 ENSMUST00000055475 0.592±0.34 0.180±0.05 0.219±0.09 0.257±0.07 22.934±5.83 1.755±0.25 0.763±0.39 0.988±0.66 0.249±0.15 3.613±0.88 0.304±0.51 0.615±0.26 0.125±0.09 0.107±0.06
ENSMUSG00000051212 ENSMUST00000049872 1.791±0.56 0.691±0.15 1.057±0.29 0.194±0.09 8.038±1.43 1.701±0.34 0.455±0.19 0.750±0.22 0.373±0.22 2.107±0.36 0.120±0.15 0.819±0.44 0.171±0.17 0.116±0.05
ENSMUSG00000102112 ENSMUST00000185880 0.272±0.09 N/A 0.522±0.30 0.454±0.09 2.253±1.85 0.413±0.00 0.448±0.15 1.018±0.27 1.876±1.34 0.670±0.40 0.667±0.36 0.758±0.53 1.547±0.59 2.959±1.55
ENSMUST00000187218 0.189±0.06 N/A 0.186±0.02 N/A 0.417±0.00 N/A 0.120±0.00 0.442±0.00 0.373±0.07 N/A 0.225±0.07 0.462±0.03 0.292±0.13 0.644±0.15
ENSMUST00000187773 0.490±0.39 0.795±0.30 0.218±0.06 N/A 0.603±0.11 0.509±0.13 0.127±0.02 0.418±0.08 0.386±0.15 0.127±0.00 0.438±0.00 0.487±0.15 1.076±0.82 0.862±0.45

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