Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0000QZ_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000154611-ENSG00000141384	CGP	9606	18:26133852-26391685
Gene	Transcript	Position	Biotype
ENSG00000141384 (TAF4B) TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa	ENST00000269142 (TAF4B-002)	26225936-26391685	protein_coding
	ENST00000400466 (TAF4B-201)	26226445-26391678	protein_coding
	ENST00000418698 (TAF4B-003)	26226883-26391683	nonsense_mediated_decay
	ENST00000578121 (TAF4B-001)	26226486-26390164	protein_coding
ENSG00000154611 (PSMA8) proteasome (prosome, macropain) subunit, alpha type, 8	ENST00000308268 (PSMA8-001)	26133877-26193355	protein_coding
	ENST00000343848 (PSMA8-003)	26133874-26193355	protein_coding
	ENST00000415576 (PSMA8-002)	26133852-26192824	protein_coding
	ENST00000538664 (PSMA8-004)	26133852-26193355	nonsense_mediated_decay
	ENST00000612461 (PSMA8-201)	26140086-26193355	protein_coding
ENSG00000188985 (DHFRP1) dihydrofolate reductase pseudogene 1	ENST00000579682 (DHFRP1-001)	26170726-26171284	processed_pseudogene
ENSG00000207160 (RNU6-1289P) RNA, U6 small nuclear 1289, pseudogene	ENST00000384431 (RNU6-1289P-201)	26366301-26366406	snRNA
ENSG00000263829 (FAM60BP) family with sequence similarity 60, member B pseudogene	ENST00000578364 (FAM60BP-001)	26255698-26256355	processed_pseudogene
ENSG00000264911 (RP11-107K17.2)	ENST00000582910 (RP11-107K17.2-001)	26348347-26349004	processed_pseudogene
ENSG00000266227 (NPM1P2) nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2	ENST00000578162 (NPM1P2-001)	26204869-26205904	processed_pseudogene
ENSG00000266237 (RP11-25D3.1)	ENST00000580975 (RP11-25D3.1-001)	26266009-26267409	sense_intronic

CIL_0000QZ_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000036743-ENSMUSG00000054321	CGP	10090	18:14706151-14900359
Gene	Transcript	Position	Biotype
ENSMUSG00000036743 (Psma8) proteasome (prosome, macropain) subunit, alpha type, 8	ENSMUST00000040860 (Psma8-201)	14706151-14762299	protein_coding
ENSMUSG00000054321 (Taf4b) TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	ENSMUST00000169862 (Taf4b-201)	14783245-14900359	protein_coding

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000141384

ENST00000269142

N/A

0.340±0.00

0.137±0.00

N/A

0.832±0.00

N/A

ENST00000400466

0.963±0.00

1.986±0.00

N/A

0.835±0.00

0.714±0.00

1.006±0.00

0.400±0.00

0.537±0.00

0.061±0.00

N/A

1.255±0.00

0.714±0.42

0.890±0.50

3.177±0.65

ENST00000418698

0.130±0.00

1.307±0.00

0.422±0.00

0.182±0.00

0.400±0.00

0.451±0.00

0.054±0.00

0.606±0.00

N/A

0.755±0.10

0.436±0.00

0.521±0.03

0.751±0.11

1.121±0.21

ENST00000578121

N/A

1.351±0.00

N/A

0.160±0.00

0.060±0.00

0.429±0.00

0.517±0.00

N/A

0.852±0.60

0.430±0.16

1.966±0.00

ENSG00000154611

ENST00000308268

N/A

0.011±0.00

N/A

1.029±0.00

ENST00000343848

0.045±0.00

0.073±0.00

N/A

0.060±0.00

N/A

0.011±0.00

0.074±0.00

1.265±0.00

ENST00000415576

N/A

0.039±0.00

0.070±0.02

N/A

0.029±0.00

0.245±0.14

7.968±5.83

ENST00000538664

N/A

ENST00000612461

N/A

0.008±0.01

0.122±0.06

3.044±0.97

ENSG00000188985

ENST00000579682

N/A

0.160±0.00

N/A

0.635±0.60

N/A

ENSG00000207160

ENST00000384431

N/A

0.546±0.00

N/A

ENSG00000263829

ENST00000578364

N/A

0.118±0.06

N/A

0.019±0.00

N/A

0.435±0.00

N/A

0.197±0.00

N/A

0.074±0.00

ENSG00000264911

ENST00000582910

N/A

0.080±0.00

N/A

0.125±0.07

0.056±0.00

N/A

ENSG00000266227

ENST00000578162

0.013±0.00

0.027±0.00

N/A

0.013±0.00

0.025±0.00

N/A

0.081±0.00

N/A

0.037±0.00

0.015±0.00

N/A

0.048±0.00

ENSG00000266237

ENST00000580975

0.232±0.00

0.221±0.00

N/A

0.096±0.00

0.121±0.00

0.119±0.11

0.082±0.00

0.199±0.00

0.044±0.00

0.356±0.30

N/A

0.286±0.45

N/A

0.148±0.00

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000036743

ENSMUST00000040860

0.144±0.02

0.279±0.14

0.072±0.02

0.086±0.03

0.080±0.04

0.106±0.04

0.125±0.10

0.084±0.08

0.511±0.15

0.194±0.06

0.023±0.00

0.665±0.37

0.098±0.05

28.959±7.46

ENSMUSG00000054321

ENSMUST00000169862

1.247±0.56

3.256±0.59

0.482±0.25

0.215±0.10

1.853±0.92

1.304±0.17

0.360±0.14

0.579±0.39

0.376±0.16

1.560±0.33

0.275±0.08

4.569±2.80

1.045±0.39

2.585±1.05

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

Loading