C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000R2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107551-ENSG00000107551 CGP 9606 10:44959407-44995891
GeneTranscriptPositionBiotype
ENSG00000107551 (RASSF4)
Ras association (RalGDS/AF-6) domain family member 4 		ENST00000340258 (RASSF4-001) 44959792-44995891 protein_coding
ENST00000427758 (RASSF4-008) 44959831-44984113 protein_coding
ENST00000428466 (RASSF4-006) 44970224-44983084 protein_coding
ENST00000462822 (RASSF4-007) 44970169-44983912 processed_transcript
ENST00000465735 (RASSF4-003) 44981039-44991960 retained_intron
ENST00000471808 (RASSF4-009) 44984876-44991055 processed_transcript
ENST00000471941 (RASSF4-004) 44983028-44991960 retained_intron
ENST00000472561 (RASSF4-012) 44971794-44993430 processed_transcript
ENST00000483709 (RASSF4-005) 44959839-44989374 nonsense_mediated_decay
ENST00000484477 (RASSF4-010) 44989333-44991343 protein_coding
ENST00000489171 (RASSF4-002) 44959407-44994707 retained_intron
ENST00000493490 (RASSF4-011) 44990538-44991970 retained_intron
ENSG00000165507 (C10orf10)
chromosome 10 open reading frame 10 		ENST00000298295 (C10orf10-001) 44976129-44978810 protein_coding
ENST00000448778 (C10orf10-003) 44977779-44978789 protein_coding
ENST00000496638 (C10orf10-002) 44970981-44978790 processed_transcript
CIL_0000R2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042129-ENSMUSG00000042129 CGP 10090 6:116633008-116673836
GeneTranscriptPositionBiotype
ENSMUSG00000042129 (Rassf4)
Ras association (RalGDS/AF-6) domain family member 4 		ENSMUST00000035842 (Rassf4-201) 116633008-116673836 protein_coding
ENSMUSG00000048489 (8430408G22Rik)
RIKEN cDNA 8430408G22 gene 		ENSMUST00000067354 (8430408G22Rik-201) 116650684-116652847 protein_coding
ENSMUST00000178241 (8430408G22Rik-202) 116650684-116652847 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000R2_0001ENSG00000107551ENST00000340258ENST00000427758ENST00000428466ENST00000462822ENST00000465735ENST00000471808ENST00000471941ENST00000472561ENST00000483709ENST00000484477ENST00000489171ENST00000493490ENSG00000165507ENST00000298295ENST00000448778ENST00000496638CIL_0000R2_0002ENSMUSG00000042129ENSMUST00000035842ENSMUSG00000048489ENSMUST00000067354ENSMUST00000178241
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000R2_0001ENSG00000107551ENST00000340258ENST00000472561ENST00000489171ENSG00000165507ENST00000298295CIL_0000R2_0002ENSMUSG00000042129ENSMUST00000035842ENSMUSG00000048489ENSMUST00000067354ENSMUST00000178241
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107551 ENST00000340258 N/A 9.993±0.00 0.894±0.00 5.482±4.07 N/A 0.597±0.00 0.906±0.00 N/A N/A N/A 0.868±0.00 3.271±0.00 9.928±0.00 N/A
ENST00000427758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.861±0.00 N/A 6.580±0.00
ENST00000483709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489171 N/A N/A 2.557±0.00 4.771±3.35 1.554±0.00 0.967±0.00 0.767±0.00 8.468±7.22 1.031±0.00 N/A N/A 4.900±2.22 N/A 2.926±0.00
ENST00000493490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165507 ENST00000298295 645.161±0.00 79.911±0.00 2.386±0.00 23.997±21.85 109.932±100.72 143.375±141.61 22.107±18.91 16.722±14.37 23.242±16.33 186.446±166.00 47.540±44.05 29.935±24.76 95.098±5.95 48.372±37.80
ENST00000448778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042129 ENSMUST00000035842 6.110±0.62 1.683±0.43 3.736±0.14 2.275±1.08 8.817±1.60 4.598±1.39 1.308±0.41 1.159±0.20 1.238±0.58 7.906±1.06 0.368±0.15 5.922±1.54 8.437±7.58 0.204±0.08
ENSMUSG00000048489 ENSMUST00000067354 27.396±20.83 6.986±0.67 25.871±6.17 0.640±0.41 13.033±5.37 1.265±0.28 10.391±4.65 4.116±0.51 34.072±23.40 17.897±2.40 3.241±0.94 2.202±1.07 8.267±6.44 0.068±0.03
ENSMUST00000178241 11.800±8.68 2.999±0.62 12.085±4.19 0.276±0.05 6.458±1.61 1.202±0.28 5.655±1.09 1.906±0.59 14.740±9.80 7.960±0.61 1.507±0.47 1.490±0.72 3.131±2.63 0.051±0.02

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