C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000RE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142192-ENSG00000166265 CGP 9606 21:25880550-26573284
GeneTranscriptPositionBiotype
ENSG00000142192 (APP)
amyloid beta (A4) precursor protein 		ENST00000346798 (APP-004) 25880550-26170654 protein_coding
ENST00000348990 (APP-003) 25880550-26170767 protein_coding
ENST00000354192 (APP-002) 25880550-26170747 protein_coding
ENST00000357903 (APP-001) 25880550-26170787 protein_coding
ENST00000358918 (APP-017) 25881610-26170667 protein_coding
ENST00000359726 (APP-201) 25880551-26171128 protein_coding
ENST00000415997 (APP-010) 25975190-26051032 protein_coding
ENST00000439274 (APP-015) 25881332-26170654 protein_coding
ENST00000440126 (APP-016) 25881331-26140460 protein_coding
ENST00000448850 (APP-005) 25945524-26090061 protein_coding
ENST00000462267 (APP-007) 26089511-26112083 retained_intron
ENST00000463070 (APP-008) 26021922-26053502 processed_transcript
ENST00000464867 (APP-012) 25881514-25897983 retained_intron
ENST00000466453 (APP-006) 26111985-26169429 processed_transcript
ENST00000474136 (APP-013) 26009596-26170746 processed_transcript
ENST00000491395 (APP-009) 25997188-26051018 processed_transcript
ENST00000548570 (APP-014) 26051160-26068338 processed_transcript
ENSG00000166265 (CYYR1)
cysteine/tyrosine-rich 1 		ENST00000299340 (CYYR1-001) 26466209-26573284 protein_coding
ENST00000400043 (CYYR1-002) 26477971-26573176 protein_coding
ENSG00000197934 (CYYR1-AS1)
cysteine/tyrosine-rich 1 antisense RNA 1 		ENST00000357401 (CYYR1-AS1-001) 26405943-26569252 antisense
ENST00000414486 (CYYR1-AS1-002) 26393635-26518593 antisense
ENSG00000224541 (AP001439.2)
 ENST00000455275 (AP001439.2-001) 26158091-26175824 antisense
ENSG00000229025 (AP001595.1)
 ENST00000435878 (AP001595.1-001) 26349780-26350634 lincRNA
ENSG00000232692 (AP001596.6)
 ENST00000421771 (AP001596.6-002) 26390136-26471698 antisense
ENST00000429340 (AP001596.6-003) 26378552-26471102 antisense
ENST00000444306 (AP001596.6-004) 26416509-26471198 antisense
ENST00000452460 (AP001596.6-001) 26387726-26418087 antisense
ENSG00000233783 (AP001442.2)
 ENST00000456904 (AP001442.2-001) 25933816-25935270 antisense
ENST00000596385 (AP001442.2-002) 25934087-25941641 antisense
ENST00000596669 (AP001442.2-005) 25934341-25935178 retained_intron
ENST00000597894 (AP001442.2-003) 25934306-25941803 antisense
ENST00000599572 (AP001442.2-006) 25934089-25935178 antisense
ENST00000600590 (AP001442.2-004) 25934312-25942686 antisense
ENST00000617755 (AP001442.2-007) 25928754-25935126 antisense
ENSG00000251972 (RNU6-123P)
RNA, U6 small nuclear 123, pseudogene 		ENST00000516163 (RNU6-123P-201) 25943044-25943145 snRNA
ENSG00000273115 (KB-1466C5.1)
 ENST00000608410 (KB-1466C5.1-001) 26459903-26460214 lincRNA
CIL_0000RE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022892-ENSMUSG00000041134 CGP 10090 16:84954440-85553397
GeneTranscriptPositionBiotype
ENSMUSG00000022892 (App)
amyloid beta (A4) precursor protein 		ENSMUST00000005406 (App-201) 84954440-85173707 protein_coding
ENSMUSG00000041134 (Cyyr1)
cysteine and tyrosine-rich protein 1 		ENSMUST00000114174 (Cyyr1-001) 85452858-85550417 protein_coding
ENSMUST00000162621 (Cyyr1-003) 85550564-85553251 processed_transcript
ENSMUST00000163020 (Cyyr1-002) 85542804-85553397 retained_intron
ENSMUST00000175700 (Cyyr1-004) 85421533-85550417 protein_coding
ENSMUSG00000089698 (Gm2541)
predicted pseudogene 2541 		ENSMUST00000161209 (Gm2541-001) 85553233-85553943 processed_pseudogene
ENSMUSG00000098604 (Gm27295)
predicted gene, 27295 		ENSMUST00000184264 (Gm27295-201) 85168849-85169001 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RE_0001ENSG00000142192ENST00000346798ENST00000348990ENST00000354192ENST00000357903ENST00000358918ENST00000359726ENST00000415997ENST00000439274ENST00000440126ENST00000448850ENST00000462267ENST00000463070ENST00000464867ENST00000466453ENST00000474136ENST00000491395ENST00000548570ENSG00000166265ENST00000299340ENST00000400043ENSG00000197934ENST00000357401ENST00000414486ENSG00000224541ENST00000455275ENSG00000229025ENST00000435878ENSG00000232692ENST00000421771ENST00000429340ENST00000444306ENST00000452460ENSG00000233783ENST00000456904ENST00000596385ENST00000596669ENST00000597894ENST00000599572ENST00000600590ENST00000617755ENSG00000251972ENST00000516163ENSG00000273115ENST00000608410CIL_0000RE_0002ENSMUSG00000022892ENSMUST00000005406ENSMUSG00000041134ENSMUST00000114174ENSMUST00000162621ENSMUST00000163020ENSMUST00000175700ENSMUSG00000089698ENSMUST00000161209ENSMUSG00000098604ENSMUST00000184264
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RE_0001ENSG00000142192ENST00000346798ENST00000348990ENST00000354192ENST00000357903ENST00000358918ENST00000439274ENST00000463070ENSG00000166265ENST00000299340ENSG00000197934ENST00000357401ENST00000414486ENSG00000224541ENST00000455275ENSG00000229025ENST00000435878ENSG00000232692ENST00000421771ENST00000429340ENST00000444306ENSG00000233783ENST00000456904ENST00000596385ENST00000596669ENST00000597894ENST00000600590ENST00000617755ENSG00000251972ENST00000516163ENSG00000273115ENST00000608410CIL_0000RE_0002ENSMUSG00000022892ENSMUST00000005406ENSMUSG00000041134ENSMUST00000114174ENSMUST00000162621ENSMUST00000163020ENSMUST00000175700ENSMUSG00000089698ENSMUST00000161209ENSMUSG00000098604ENSMUST00000184264
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142192 ENST00000346798 N/A N/A N/A N/A N/A 41.159±0.00 39.393±0.00 N/A 18.876±0.00 32.103±25.15 5.312±1.96 45.990±25.47 92.975±10.52 N/A
ENST00000348990 N/A N/A N/A 70.558±43.20 N/A N/A 2.284±0.00 N/A N/A N/A 4.274±0.00 N/A N/A N/A
ENST00000354192 N/A N/A N/A N/A N/A N/A N/A N/A 14.611±0.00 27.503±0.00 N/A N/A N/A 26.697±0.00
ENST00000357903 110.831±0.00 94.457±0.00 33.742±0.00 109.033±64.00 35.087±8.45 88.740±58.23 23.996±17.42 125.331±103.39 21.623±2.90 53.558±38.42 11.646±0.00 55.554±20.36 93.404±31.89 77.572±29.90
ENST00000358918 N/A N/A N/A N/A 11.535±0.00 N/A 5.581±0.00 N/A 20.180±0.00 35.083±26.92 1.819±0.00 11.081±0.00 N/A N/A
ENST00000359726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439274 89.423±0.00 79.155±0.00 30.189±0.00 217.694±0.00 27.081±6.18 54.866±40.87 46.747±0.00 84.949±69.63 20.100±0.00 84.131±0.00 13.412±0.00 65.100±32.27 112.935±58.10 56.504±0.17
ENST00000440126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463070 N/A N/A N/A 194.274±0.00 N/A N/A 25.474±0.00 55.705±0.00 91.883±0.00 45.779±0.00 N/A N/A N/A N/A
ENST00000464867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166265 ENST00000299340 22.225±0.00 12.523±0.00 0.522±0.00 1.207±0.16 9.172±3.80 7.190±5.77 6.426±3.13 1.820±1.65 0.728±0.19 11.489±6.70 2.525±1.74 3.001±1.48 9.939±4.06 5.057±4.49
ENST00000400043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197934 ENST00000357401 0.044±0.00 0.080±0.00 N/A 0.073±0.00 0.103±0.02 0.037±0.00 0.062±0.02 0.058±0.00 0.039±0.02 0.027±0.00 0.003±0.00 0.029±0.02 0.031±0.02 0.116±0.00
ENST00000414486 N/A N/A N/A 0.601±0.00 N/A N/A N/A N/A N/A 0.062±0.00 0.246±0.00 N/A N/A N/A
ENSG00000224541 ENST00000455275 N/A N/A N/A 0.337±0.00 N/A N/A 0.322±0.00 N/A N/A N/A N/A N/A N/A 0.177±0.03
ENSG00000229025 ENST00000435878 0.050±0.00 0.339±0.00 N/A 0.161±0.00 0.026±0.00 N/A N/A 0.026±0.00 0.023±0.00 0.212±0.00 0.023±0.00 0.040±0.00 N/A 0.139±0.00
ENSG00000232692 ENST00000421771 0.015±0.00 N/A N/A 0.195±0.00 N/A N/A 0.204±0.00 N/A N/A N/A N/A 0.063±0.05 0.071±0.00 0.147±0.08
ENST00000429340 0.032±0.00 N/A N/A 0.110±0.00 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A
ENST00000444306 N/A N/A N/A N/A 0.441±0.00 0.064±0.00 N/A N/A N/A N/A N/A 0.483±0.00 0.192±0.00 0.497±0.00
ENST00000452460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233783 ENST00000456904 N/A N/A N/A 0.257±0.00 N/A 1.132±0.00 0.154±0.00 N/A 1.193±0.00 N/A N/A 0.542±0.51 0.029±0.00 N/A
ENST00000596385 N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.246±0.00
ENST00000596669 N/A 0.662±0.00 2.027±0.00 0.627±0.00 N/A 0.667±0.45 0.231±0.00 N/A 0.104±0.00 0.897±0.00 N/A 0.151±0.00 0.058±0.00 0.249±0.00
ENST00000597894 N/A N/A N/A 0.253±0.00 0.277±0.00 1.642±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600590 N/A N/A N/A N/A N/A N/A 0.063±0.00 0.200±0.00 N/A N/A 0.447±0.00 0.042±0.02 N/A 0.114±0.00
ENST00000617755 1.593±0.00 3.828±0.00 N/A 1.104±0.00 1.510±0.00 1.099±0.00 0.926±0.00 1.658±1.22 0.789±0.00 3.100±0.00 0.780±0.17 0.248±0.16 0.158±0.00 1.995±0.00
ENSG00000251972 ENST00000516163 N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.500±0.00 N/A 1.456±0.00
ENSG00000273115 ENST00000608410 0.052±0.00 N/A N/A N/A N/A 0.096±0.00 1.670±1.62 N/A N/A N/A N/A 0.524±0.00 0.252±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022892 ENSMUST00000005406 64.615±9.94 30.948±5.44 44.431±0.42 236.257±114.06 47.578±8.94 68.194±31.11 12.799±5.19 168.121±31.37 5.136±2.18 135.970±45.89 6.732±1.36 57.435±46.07 39.715±22.18 14.322±5.87
ENSMUSG00000041134 ENSMUST00000114174 7.027±2.78 4.320±1.26 2.938±0.27 0.746±0.13 4.597±1.23 1.312±0.17 6.921±0.47 3.329±0.50 0.422±0.20 45.325±2.48 2.430±0.31 3.488±0.74 1.212±0.81 0.488±0.25
ENSMUST00000162621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.504±0.00
ENSMUST00000163020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.850±0.56
ENSMUST00000175700 7.874±2.28 32.220±2.37 N/A N/A 13.319±5.34 2.752±0.58 4.880±0.32 4.107±0.55 0.912±0.22 80.514±19.37 N/A 10.463±2.26 N/A N/A
ENSMUSG00000089698 ENSMUST00000161209 N/A N/A N/A N/A N/A 1.674±0.30 N/A N/A 0.767±0.27 N/A N/A N/A N/A 4.554±1.82
ENSMUSG00000098604 ENSMUST00000184264 N/A N/A N/A 1.912±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.829±0.00 N/A

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