C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000S7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146674-ENSG00000136205 CGP 9606 7:45912245-47582558
GeneTranscriptPositionBiotype
ENSG00000136205 (TNS3)
tensin 3 		ENST00000311160 (TNS3-001) 47275154-47582144 protein_coding
ENST00000413551 (TNS3-014) 47435282-47453231 protein_coding
ENST00000415929 (TNS3-013) 47424159-47481285 protein_coding
ENST00000428457 (TNS3-010) 47275154-47280318 protein_coding
ENST00000434451 (TNS3-012) 47439643-47581631 protein_coding
ENST00000442536 (TNS3-006) 47400901-47539601 protein_coding
ENST00000450444 (TNS3-005) 47369281-47539277 protein_coding
ENST00000457718 (TNS3-003) 47302967-47582558 protein_coding
ENST00000458317 (TNS3-201) 47405494-47539601 protein_coding
ENST00000469470 (TNS3-015) 47369497-47403425 processed_transcript
ENST00000474346 (TNS3-011) 47579170-47582099 processed_transcript
ENST00000485555 (TNS3-016) 47396594-47400438 retained_intron
ENSG00000146674 (IGFBP3)
insulin-like growth factor binding protein 3 		ENST00000275521 (IGFBP3-001) 45912598-45921274 protein_coding
ENST00000381083 (IGFBP3-020) 45913805-45921251 protein_coding
ENST00000381086 (IGFBP3-008) 45912245-45921272 protein_coding
ENST00000417621 (IGFBP3-019) 45914470-45917426 protein_coding
ENST00000428530 (IGFBP3-018) 45914101-45917397 protein_coding
ENST00000448817 (IGFBP3-014) 45916572-45921874 protein_coding
ENST00000460209 (IGFBP3-017) 45913773-45915325 retained_intron
ENST00000460477 (IGFBP3-016) 45916996-45920867 retained_intron
ENST00000465642 (IGFBP3-015) 45916621-45920415 processed_transcript
ENST00000613132 (IGFBP3-201) 45912251-45921140 protein_coding
ENST00000615754 (IGFBP3-202) 45914820-45921140 protein_coding
ENSG00000214754 (AC004870.5)
 ENST00000315132 (AC004870.5-001) 47052793-47053674 processed_pseudogene
ENSG00000221971 (TTC4P1)
tetratricopeptide repeat domain 4 pseudogene 1 		ENST00000427137 (TTC4P1-001) 45999621-46000778 processed_pseudogene
ENSG00000223829 (AC004870.4)
 ENST00000423781 (AC004870.4-001) 46969716-47027481 lincRNA
ENST00000438639 (AC004870.4-003) 46969721-46972692 retained_intron
ENST00000445615 (AC004870.4-002) 46969702-46983429 lincRNA
ENSG00000224547 (ZNF619P1)
zinc finger protein 619 pseudogene 1 		ENST00000446539 (ZNF619P1-001) 46144937-46145688 processed_pseudogene
ENSG00000229459 (AC023669.1)
 ENST00000414915 (AC023669.1-001) 46261064-46294469 lincRNA
ENSG00000229628 (AC073115.7)
 ENST00000436056 (AC073115.7-001) 45990905-46000898 lincRNA
ENSG00000230680 (AC004869.2)
 ENST00000440935 (AC004869.2-001) 46477822-46481578 lincRNA
ENSG00000232072 (AC004901.1)
 ENST00000424359 (AC004901.1-001) 46890625-46900932 lincRNA
ENST00000433337 (AC004901.1-002) 46890627-47049678 lincRNA
ENSG00000233539 (AC011294.3)
 ENST00000451905 (AC011294.3-003) 46687879-46697122 lincRNA
ENST00000469937 (AC011294.3-002) 46688940-46759844 lincRNA
ENST00000487094 (AC011294.3-001) 46673785-46759851 lincRNA
ENSG00000233952 (FTLP15)
ferritin, light polypeptide pseudogene 15 		ENST00000455449 (FTLP15-001) 45997540-45998071 processed_pseudogene
ENSG00000237471 (AC073115.6)
 ENST00000416708 (AC073115.6-001) 45969657-45980191 lincRNA
ENSG00000242552 (MRPL42P4)
mitochondrial ribosomal protein L42 pseudogene 4 		ENST00000453267 (MRPL42P4-001) 47026128-47026570 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000S7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020427-ENSMUSG00000020422 CGP 10090 11:7206086-8664535
GeneTranscriptPositionBiotype
ENSMUSG00000020422 (Tns3)
tensin 3 		ENSMUST00000020695 (Tns3-001) 8431652-8664535 protein_coding
ENSMUST00000129074 (Tns3-004) 8451070-8468675 processed_transcript
ENSMUST00000131941 (Tns3-002) 8537539-8545351 processed_transcript
ENSMUST00000134823 (Tns3-003) 8545693-8579121 processed_transcript
ENSMUSG00000020427 (Igfbp3)
insulin-like growth factor binding protein 3 		ENSMUST00000020702 (Igfbp3-001) 7206086-7213897 protein_coding
ENSMUST00000135887 (Igfbp3-002) 7207686-7213923 protein_coding
ENSMUSG00000082459 (Gm11988)
predicted gene 11988 		ENSMUST00000122321 (Gm11988-001) 8112363-8114094 processed_pseudogene
ENSMUSG00000083553 (Gm11989)
predicted gene 11989 		ENSMUST00000117240 (Gm11989-001) 8383182-8383853 processed_pseudogene
ENSMUSG00000087637 (Gm11986)
predicted gene 11986 		ENSMUST00000149481 (Gm11986-001) 7270351-7290374 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S7_0001ENSG00000136205ENST00000311160ENST00000413551ENST00000415929ENST00000428457ENST00000434451ENST00000442536ENST00000450444ENST00000457718ENST00000458317ENST00000469470ENST00000474346ENST00000485555ENSG00000146674ENST00000275521ENST00000381083ENST00000381086ENST00000417621ENST00000428530ENST00000448817ENST00000460209ENST00000460477ENST00000465642ENST00000613132ENST00000615754ENSG00000214754ENST00000315132ENSG00000221971ENST00000427137ENSG00000223829ENST00000423781ENST00000438639ENST00000445615ENSG00000224547ENST00000446539ENSG00000229459ENST00000414915ENSG00000229628ENST00000436056ENSG00000230680ENST00000440935ENSG00000232072ENST00000424359ENST00000433337ENSG00000233539ENST00000451905ENST00000469937ENST00000487094ENSG00000233952ENST00000455449ENSG00000237471ENST00000416708ENSG00000242552ENST00000453267CIL_0000S7_0002ENSMUSG00000020422ENSMUST00000020695ENSMUST00000129074ENSMUST00000131941ENSMUST00000134823ENSMUSG00000020427ENSMUST00000020702ENSMUST00000135887ENSMUSG00000082459ENSMUST00000122321ENSMUSG00000083553ENSMUST00000117240ENSMUSG00000087637ENSMUST00000149481
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S7_0001ENSG00000136205ENST00000311160ENST00000428457ENST00000450444ENST00000457718ENSG00000146674ENST00000275521ENST00000381086ENST00000613132ENSG00000214754ENST00000315132ENSG00000221971ENST00000427137ENSG00000223829ENST00000423781ENST00000438639ENST00000445615ENSG00000224547ENST00000446539ENSG00000229459ENST00000414915ENSG00000229628ENST00000436056ENSG00000230680ENST00000440935ENSG00000232072ENST00000424359ENST00000433337ENSG00000233539ENST00000451905ENSG00000233952ENST00000455449ENSG00000237471ENST00000416708ENSG00000242552ENST00000453267CIL_0000S7_0002ENSMUSG00000020422ENSMUST00000020695ENSMUST00000129074ENSMUSG00000020427ENSMUST00000020702ENSMUST00000135887ENSMUSG00000082459ENSMUST00000122321ENSMUSG00000083553ENSMUST00000117240ENSMUSG00000087637ENSMUST00000149481
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136205 ENST00000311160 5.231±0.00 4.336±0.00 N/A 0.992±0.00 4.952±0.00 0.990±0.00 1.509±0.00 4.543±0.32 N/A 2.696±0.00 N/A 7.557±5.22 14.031±4.86 1.457±0.00
ENST00000413551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428457 N/A 2.681±0.00 N/A N/A N/A 0.901±0.00 N/A N/A 0.776±0.00 N/A N/A 1.369±0.00 N/A 0.887±0.00
ENST00000434451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450444 N/A N/A 10.533±0.00 N/A N/A 3.314±0.00 1.226±0.00 6.506±0.00 2.665±0.00 6.927±0.00 1.248±0.00 5.366±0.00 N/A N/A
ENST00000457718 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.344±0.00 N/A N/A N/A N/A
ENST00000458317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000146674 ENST00000275521 25.729±0.00 12.241±0.00 3.685±0.00 2.105±1.40 29.102±0.00 7.795±0.00 1.683±0.00 42.708±0.00 8.066±0.00 3.962±0.00 2.964±0.00 29.758±1.10 292.858±93.61 6.782±3.51
ENST00000381083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000381086 N/A N/A N/A N/A 6.327±0.00 5.186±0.00 1.039±0.00 10.092±0.00 5.834±0.00 3.145±0.00 0.541±0.00 27.371±21.08 692.691±400.35 1.098±0.00
ENST00000417621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613132 N/A 8.124±0.00 6.560±0.00 2.438±0.59 19.164±0.00 1.945±0.00 1.057±0.00 48.209±0.00 9.208±0.00 3.643±1.70 N/A 118.840±0.00 128.123±0.00 1.915±0.00
ENST00000615754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214754 ENST00000315132 N/A N/A 1.402±0.00 N/A N/A N/A 0.036±0.00 0.310±0.00 N/A N/A N/A N/A 0.258±0.21 0.449±0.00
ENSG00000221971 ENST00000427137 N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A 0.056±0.02 N/A 0.165±0.00 N/A 0.743±0.00 0.094±0.00
ENSG00000223829 ENST00000423781 N/A N/A 0.257±0.00 0.043±0.00 N/A 0.183±0.00 N/A N/A N/A 0.056±0.00 N/A N/A 0.039±0.00 N/A
ENST00000438639 N/A N/A N/A N/A N/A 0.490±0.00 0.103±0.00 0.068±0.00 N/A N/A N/A 0.040±0.01 N/A N/A
ENST00000445615 N/A N/A 0.078±0.00 N/A N/A 0.275±0.00 N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A
ENSG00000224547 ENST00000446539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 0.026±0.00
ENSG00000229459 ENST00000414915 N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A 0.230±0.05 N/A N/A 0.195±0.00 0.098±0.00
ENSG00000229628 ENST00000436056 N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A 0.548±0.00 N/A N/A N/A N/A 0.108±0.00
ENSG00000230680 ENST00000440935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.716±0.47
ENSG00000232072 ENST00000424359 N/A N/A N/A N/A N/A N/A N/A 0.354±0.00 N/A N/A N/A 0.317±0.00 N/A N/A
ENST00000433337 N/A N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233539 ENST00000451905 N/A 0.038±0.00 N/A N/A N/A N/A 0.061±0.00 0.027±0.00 N/A 0.046±0.00 N/A 0.014±0.00 0.028±0.00 0.041±0.00
ENST00000469937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233952 ENST00000455449 0.029±0.00 N/A N/A N/A 0.162±0.00 0.029±0.00 0.027±0.00 N/A 0.214±0.00 N/A 0.156±0.00 N/A 0.431±0.36 0.085±0.00
ENSG00000237471 ENST00000416708 N/A N/A N/A N/A 0.152±0.00 N/A 0.048±0.00 N/A N/A 0.138±0.00 N/A 0.065±0.00 0.095±0.01 0.201±0.00
ENSG00000242552 ENST00000453267 N/A N/A 0.877±0.00 N/A N/A N/A 0.244±0.00 N/A N/A N/A N/A N/A 0.054±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020422 ENSMUST00000020695 6.655±3.53 10.372±1.94 6.746±2.30 1.754±0.44 5.626±1.44 14.543±0.66 2.333±0.34 14.915±5.18 2.583±1.20 19.110±5.22 0.449±0.13 21.940±12.00 9.069±5.83 1.518±0.56
ENSMUST00000129074 N/A 11.933±0.27 N/A N/A N/A N/A N/A N/A N/A 39.517±0.00 N/A N/A N/A N/A
ENSMUST00000131941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020427 ENSMUST00000020702 58.461±29.50 16.370±5.09 29.691±0.80 6.529±4.35 16.022±3.23 16.548±2.36 11.493±0.39 158.562±13.49 14.782±5.42 28.882±1.52 6.701±0.62 20.128±5.30 12.581±10.45 0.982±0.46
ENSMUST00000135887 4.445±0.00 94.450±20.90 N/A 1.973±0.90 22.969±9.43 26.867±7.00 N/A 65.644±0.00 4.279±1.38 14.717±10.63 N/A 52.278±12.48 N/A N/A
ENSMUSG00000082459 ENSMUST00000122321 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 0.005±0.00 N/A
ENSMUSG00000083553 ENSMUST00000117240 0.336±0.00 N/A 0.087±0.02 0.057±0.01 0.530±0.00 N/A N/A 0.099±0.03 0.041±0.02 0.078±0.00 N/A 0.090±0.01 0.182±0.25 N/A
ENSMUSG00000087637 ENSMUST00000149481 0.064±0.00 N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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