C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000UM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000203867-ENSG00000150593 CGP 9606 10:110644397-110900006
GeneTranscriptPositionBiotype
ENSG00000150593 (PDCD4)
programmed cell death 4 (neoplastic transformation inhibitor) 		ENST00000280154 (PDCD4-001) 110871807-110900006 protein_coding
ENST00000393104 (PDCD4-201) 110871795-110900005 protein_coding
ENST00000444997 (PDCD4-004) 110871955-110887844 protein_coding
ENST00000462577 (PDCD4-006) 110885253-110898122 processed_transcript
ENST00000467574 (PDCD4-002) 110871893-110887761 processed_transcript
ENST00000481353 (PDCD4-007) 110884771-110894179 processed_transcript
ENST00000483595 (PDCD4-009) 110887773-110896043 processed_transcript
ENST00000483670 (PDCD4-003) 110871919-110885339 processed_transcript
ENST00000489049 (PDCD4-008) 110887753-110890870 processed_transcript
ENST00000492932 (PDCD4-005) 110880319-110887798 processed_transcript
ENST00000498367 (PDCD4-010) 110890638-110898718 processed_transcript
ENSG00000203497 (PDCD4-AS1)
PDCD4 antisense RNA 1 		ENST00000420367 (PDCD4-AS1-001) 110869868-110872233 antisense
ENSG00000203867 (RBM20)
RNA binding motif protein 20 		ENST00000369519 (RBM20-001) 110644397-110839469 protein_coding
ENST00000465774 (RBM20-008) 110835178-110836258 retained_intron
ENST00000471172 (RBM20-006) 110823588-110831513 processed_transcript
ENST00000480343 (RBM20-007) 110827771-110836234 processed_transcript
ENSG00000232470 (RP11-313D6.3)
 ENST00000416249 (RP11-313D6.3-001) 110869743-110871594 lincRNA
ENSG00000252036 (RN7SKP288)
RNA, 7SK small nuclear pseudogene 288 		ENST00000516227 (RN7SKP288-201) 110756456-110756723 misc_RNA
CIL_0000UM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043639-ENSMUSG00000024975 CGP 10090 19:53677306-53929861
GeneTranscriptPositionBiotype
ENSMUSG00000024975 (Pdcd4)
programmed cell death 4 		ENSMUST00000025931 (Pdcd4-201) 53903351-53929861 protein_coding
ENSMUST00000074371 (Pdcd4-202) 53892231-53929861 protein_coding
ENSMUST00000165617 (Pdcd4-203) 53903351-53929861 protein_coding
ENSMUSG00000043639 (Rbm20)
RNA binding motif protein 20 		ENSMUST00000095969 (Rbm20-001) 53677306-53843763 protein_coding
ENSMUST00000161856 (Rbm20-002) 53843210-53867080 nonsense_mediated_decay
ENSMUST00000162910 (Rbm20-003) 53793308-53813573 processed_transcript
ENSMUST00000164202 (Rbm20-201) 53677306-53867080 protein_coding
ENSMUSG00000084957 (Bbip1)
BBSome interacting protein 1 		ENSMUST00000135402 (Bbip1-201) 53929677-53944627 protein_coding
ENSMUSG00000089679 (Gm16299)
predicted gene 16299 		ENSMUST00000162724 (Gm16299-001) 53819354-53825128 antisense
ENSMUSG00000089807 (Gm16298)
predicted gene 16298 		ENSMUST00000161107 (Gm16298-001) 53767891-53768310 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UM_0001ENSG00000150593ENST00000280154ENST00000393104ENST00000444997ENST00000462577ENST00000467574ENST00000481353ENST00000483595ENST00000483670ENST00000489049ENST00000492932ENST00000498367ENSG00000203497ENST00000420367ENSG00000203867ENST00000369519ENST00000465774ENST00000471172ENST00000480343ENSG00000232470ENST00000416249ENSG00000252036ENST00000516227CIL_0000UM_0002ENSMUSG00000024975ENSMUST00000025931ENSMUST00000074371ENSMUST00000165617ENSMUSG00000043639ENSMUST00000095969ENSMUST00000161856ENSMUST00000162910ENSMUST00000164202ENSMUSG00000084957ENSMUST00000135402ENSMUSG00000089679ENSMUST00000162724ENSMUSG00000089807ENSMUST00000161107
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UM_0001ENSG00000150593ENST00000280154ENST00000444997ENST00000462577ENST00000481353ENST00000483595ENST00000492932ENST00000498367ENSG00000203497ENST00000420367ENSG00000203867ENST00000369519ENST00000465774ENSG00000232470ENST00000416249ENSG00000252036ENST00000516227CIL_0000UM_0002ENSMUSG00000024975ENSMUST00000025931ENSMUST00000074371ENSMUST00000165617ENSMUSG00000043639ENSMUST00000095969ENSMUST00000161856ENSMUST00000162910ENSMUST00000164202ENSMUSG00000084957ENSMUST00000135402ENSMUSG00000089679ENSMUST00000162724ENSMUSG00000089807ENSMUST00000161107
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000150593 ENST00000280154 N/A N/A N/A 2.065±0.00 N/A 5.957±0.00 N/A 1.262±0.00 N/A 2.482±0.00 N/A 5.897±1.30 N/A N/A
ENST00000393104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444997 39.310±0.00 N/A N/A N/A 33.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462577 26.202±0.00 N/A N/A N/A 29.626±0.00 N/A N/A N/A N/A N/A N/A 62.536±16.75 48.563±30.21 48.659±10.04
ENST00000467574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481353 N/A N/A N/A N/A N/A N/A N/A N/A 19.416±0.00 N/A N/A 20.941±0.00 N/A N/A
ENST00000483595 44.519±0.00 N/A N/A N/A 45.942±0.00 41.909±0.00 19.735±0.00 N/A N/A N/A N/A 123.130±0.00 130.623±0.00 57.207±0.00
ENST00000483670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492932 N/A N/A N/A N/A N/A 28.522±0.00 3.940±0.00 N/A 31.020±0.00 20.464±0.00 N/A 24.111±0.00 N/A N/A
ENST00000498367 33.112±0.00 77.171±0.00 N/A 16.363±7.73 37.149±0.00 30.368±3.24 N/A 8.147±0.00 21.099±0.00 17.968±1.31 6.578±0.00 59.966±45.71 72.182±59.11 55.726±0.00
ENSG00000203497 ENST00000420367 1.145±0.00 N/A N/A 0.581±0.30 0.700±0.29 0.320±0.00 0.470±0.00 0.504±0.00 0.575±0.00 1.643±0.00 0.318±0.00 1.844±1.06 2.481±0.05 1.691±0.01
ENSG00000203867 ENST00000369519 0.335±0.00 0.148±0.00 0.093±0.00 0.108±0.00 0.197±0.02 0.671±0.00 16.337±8.76 0.058±0.02 0.063±0.05 0.179±0.02 3.673±2.00 0.115±0.05 0.138±0.05 0.664±0.00
ENST00000465774 N/A N/A N/A N/A N/A N/A N/A N/A 0.400±0.00 N/A N/A N/A N/A N/A
ENST00000471172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232470 ENST00000416249 0.108±0.00 N/A N/A 0.039±0.00 0.225±0.00 N/A 0.035±0.00 0.417±0.00 0.396±0.00 0.249±0.00 N/A 0.273±0.14 N/A 0.507±0.24
ENSG00000252036 ENST00000516227 N/A N/A 2.639±0.00 N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A 0.288±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024975 ENSMUST00000025931 10.948±1.75 3.684±0.26 37.149±2.92 10.313±0.37 9.547±2.39 6.642±1.57 3.878±0.29 7.016±1.61 10.660±4.45 6.507±0.62 3.457±0.24 9.102±4.34 15.990±4.44 7.762±1.30
ENSMUST00000074371 N/A 3.047±0.00 N/A N/A N/A N/A N/A N/A 3.725±0.16 N/A N/A N/A N/A N/A
ENSMUST00000165617 12.274±2.64 4.201±0.00 17.518±0.00 74.333±0.00 N/A 7.917±0.41 N/A N/A N/A N/A N/A 20.383±32.60 25.779±17.83 56.459±72.91
ENSMUSG00000043639 ENSMUST00000095969 N/A 0.092±0.00 N/A N/A N/A N/A N/A 0.401±0.09 N/A 0.470±0.15 N/A 0.243±0.03 N/A 0.094±0.00
ENSMUST00000161856 0.163±0.00 0.372±0.13 N/A 0.597±0.00 N/A 1.369±0.00 N/A 0.300±0.00 0.287±0.08 N/A N/A 1.114±0.14 1.388±0.94 0.161±0.01
ENSMUST00000162910 N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164202 0.293±0.22 0.063±0.00 0.381±0.03 0.222±0.03 0.432±0.00 0.140±0.02 25.545±1.44 0.249±0.02 0.061±0.02 0.416±0.21 8.246±3.22 0.231±0.06 0.519±0.34 0.101±0.03
ENSMUSG00000084957 ENSMUST00000135402 N/A N/A N/A 12.862±0.25 N/A N/A 3.534±0.55 3.055±0.37 4.561±0.67 3.128±0.00 8.492±1.24 7.844±0.72 6.417±0.00 12.485±0.53
ENSMUSG00000089679 ENSMUST00000162724 0.263±0.07 0.390±0.11 0.192±0.04 0.117±0.10 0.411±0.17 0.124±0.04 0.721±0.05 0.109±0.05 0.137±0.16 0.085±0.06 0.382±0.19 0.251±0.11 0.076±0.04 0.147±0.10
ENSMUSG00000089807 ENSMUST00000161107 N/A N/A 0.060±0.03 0.028±0.00 N/A 0.214±0.00 0.488±0.23 0.121±0.00 N/A N/A 0.162±0.01 N/A 0.159±0.09 N/A

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