C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000UR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119953-ENSG00000138166 CGP 9606 10:110290730-110511544
GeneTranscriptPositionBiotype
ENSG00000119953 (SMNDC1)
survival motor neuron domain containing 1
ENST00000369592 (SMNDC1-002) 110294062-110304697 protein_coding
ENST00000369603 (SMNDC1-001) 110290730-110304951 protein_coding
ENST00000460483 (SMNDC1-003) 110295230-110304906 processed_transcript
ENST00000471297 (SMNDC1-004) 110297570-110304938 processed_transcript
ENST00000477763 (SMNDC1-005) 110298677-110304131 retained_intron
ENSG00000138166 (DUSP5)
dual specificity phosphatase 5
ENST00000369583 (DUSP5-001) 110497838-110511544 protein_coding
ENST00000468749 (DUSP5-003) 110502747-110510437 processed_transcript
ENSG00000237642 (HMGB3P5)
high mobility group box 3 pseudogene 5
ENST00000428894 (HMGB3P5-001) 110450629-110451240 processed_pseudogene
ENSG00000273143 (RP11-525A16.4)
ENST00000607952 (RP11-525A16.4-002) 110475104-110496204 lincRNA
ENST00000609514 (RP11-525A16.4-001) 110428840-110496187 lincRNA
CIL_0000UR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025024-ENSMUSG00000034765 CGP 10090 19:53379214-53542431
GeneTranscriptPositionBiotype
ENSMUSG00000025024 (Smndc1)
survival motor neuron domain containing 1
ENSMUST00000025997 (Smndc1-201) 53379214-53390573 protein_coding
ENSMUSG00000034765 (Dusp5)
dual specificity phosphatase 5
ENSMUST00000038287 (Dusp5-001) 53529109-53542431 protein_coding
ENSMUSG00000097636 (5830416P10Rik)
RIKEN cDNA 5830416P10 gene
ENSMUST00000180489 (5830416P10Rik-201) 53441212-53464796 lincRNA
ENSMUST00000180667 (5830416P10Rik-202) 53444014-53447314 lincRNA
ENSMUST00000181539 (5830416P10Rik-203) 53451641-53454094 lincRNA
ENSMUSG00000097779 (4833407H14Rik)
RIKEN cDNA 4833407H14 gene
ENSMUST00000180442 (4833407H14Rik-201) 53460631-53462723 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UR_0001ENSG00000119953ENST00000369592ENST00000369603ENST00000460483ENST00000471297ENST00000477763ENSG00000138166ENST00000369583ENST00000468749ENSG00000237642ENST00000428894ENSG00000273143ENST00000607952ENST00000609514CIL_0000UR_0002ENSMUSG00000025024ENSMUST00000025997ENSMUSG00000034765ENSMUST00000038287ENSMUSG00000097636ENSMUST00000180489ENSMUST00000180667ENSMUST00000181539ENSMUSG00000097779ENSMUST00000180442
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UR_0001ENSG00000119953ENST00000369592ENST00000369603ENST00000460483ENST00000471297ENSG00000138166ENST00000369583ENSG00000237642ENST00000428894ENSG00000273143ENST00000607952ENST00000609514CIL_0000UR_0002ENSMUSG00000025024ENSMUST00000025997ENSMUSG00000034765ENSMUST00000038287ENSMUSG00000097636ENSMUST00000180489ENSMUST00000180667ENSMUST00000181539ENSMUSG00000097779ENSMUST00000180442
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119953 ENST00000369592 6.781±0.00 N/A N/A 6.240±0.00 4.264±2.34 4.485±0.00 N/A N/A 2.748±0.00 N/A N/A 41.373±0.00 3.816±1.05 19.746±7.06
ENST00000369603 N/A 0.794±0.00 0.628±0.00 1.183±0.30 1.954±0.00 1.020±0.00 0.311±0.11 0.894±0.00 0.501±0.19 1.095±0.00 1.012±0.47 2.210±1.41 2.942±0.35 4.046±0.88
ENST00000460483 N/A N/A N/A N/A N/A 2.485±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471297 N/A N/A 0.890±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138166 ENST00000369583 20.574±0.00 10.995±0.00 N/A 2.210±0.82 5.234±2.08 2.591±1.41 2.176±1.08 3.271±0.70 2.490±2.07 32.320±0.00 0.889±0.33 17.221±14.89 38.368±8.30 15.331±12.96
ENST00000468749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237642 ENST00000428894 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A 0.018±0.00 0.188±0.00 N/A N/A
ENSG00000273143 ENST00000607952 N/A 0.542±0.00 N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A 0.296±0.02 0.146±0.00 0.481±0.43
ENST00000609514 N/A 0.036±0.00 N/A N/A 0.037±0.00 N/A N/A N/A 0.419±0.00 N/A N/A 0.189±0.00 0.107±0.03 0.042±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025024 ENSMUST00000025997 3.045±0.38 3.967±1.47 9.820±1.21 6.234±0.32 4.121±0.77 2.341±0.76 2.663±0.79 3.044±1.02 3.829±2.83 4.359±0.94 6.116±0.69 3.111±2.04 18.138±4.44 3.667±0.79
ENSMUSG00000034765 ENSMUST00000038287 1.388±0.39 2.253±1.02 3.342±0.69 0.846±0.04 3.035±1.23 6.342±0.55 2.944±0.38 0.617±0.20 0.804±0.46 5.567±0.67 0.234±0.22 8.492±3.27 15.488±8.74 3.062±1.47
ENSMUSG00000097636 ENSMUST00000180489 0.053±0.03 N/A N/A N/A 0.129±0.05 0.153±0.04 0.042±0.04 0.039±0.02 0.084±0.11 0.195±0.00 0.027±0.02 0.063±0.02 2.862±2.68 0.026±0.01
ENSMUST00000180667 0.210±0.08 N/A 0.575±0.00 0.352±0.00 0.816±0.33 0.869±0.08 0.060±0.01 0.203±0.06 0.134±0.15 0.818±0.31 0.027±0.01 0.202±0.10 7.315±6.44 0.124±0.07
ENSMUST00000181539 N/A N/A N/A N/A N/A N/A 0.051±0.04 0.071±0.01 0.043±0.02 N/A 0.017±0.00 0.170±0.00 N/A 0.017±0.00
ENSMUSG00000097779 ENSMUST00000180442 0.203±0.12 N/A 0.299±0.06 0.011±0.00 0.542±0.26 3.179±0.54 0.068±0.05 0.075±0.03 0.123±0.12 0.776±0.19 0.163±0.00 0.172±0.07 0.405±0.33 0.029±0.00

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