C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000VV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147799-ENSG00000198169 CGP 9606 8:144529179-144756417
GeneTranscriptPositionBiotype
ENSG00000147799 (ARHGAP39)
Rho GTPase activating protein 39 		ENST00000276826 (ARHGAP39-001) 144529179-144605816 protein_coding
ENST00000377307 (ARHGAP39-002) 144529179-144605699 protein_coding
ENST00000528810 (ARHGAP39-003) 144537758-144545664 processed_transcript
ENSG00000198169 (ZNF251)
zinc finger protein 251 		ENST00000292562 (ZNF251-001) 144721129-144755605 protein_coding
ENST00000524394 (ZNF251-003) 144720907-144755486 processed_transcript
ENST00000525191 (ZNF251-004) 144753454-144755441 protein_coding
ENST00000530353 (ZNF251-002) 144753681-144756417 retained_intron
ENSG00000254533 (AF186192.1)
 ENST00000525376 (AF186192.1-001) 144698614-144699185 lincRNA
ENSG00000255085 (AF186192.5)
 ENST00000524514 (AF186192.5-002) 144700353-144707206 processed_transcript
ENST00000528794 (AF186192.5-005) 144700659-144707532 processed_transcript
ENST00000529026 (AF186192.5-003) 144705630-144707157 processed_transcript
ENST00000578723 (AF186192.5-004) 144700659-144707335 processed_transcript
ENST00000581667 (AF186192.5-001) 144705534-144708517 transcribed_unprocessed_pseudogene
ENSG00000255456 (CTD-2517M22.9)
 ENST00000529377 (CTD-2517M22.9-001) 144584040-144586488 antisense
ENSG00000263612 (AF186192.6)
 ENST00000583427 (AF186192.6-001) 144713899-144714845 lincRNA
ENSG00000274772 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000617099 (Metazoa_SRP.1-296) 144683169-144683464 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000VV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033697-ENSMUSG00000022526 CGP 10090 15:76723985-76871435
GeneTranscriptPositionBiotype
ENSMUSG00000022526 (Zfp251)
zinc finger protein 251 		ENSMUST00000080406 (Zfp251-201) 76852148-76871435 protein_coding
ENSMUSG00000033697 (Arhgap39)
Rho GTPase activating protein 39 		ENSMUST00000036176 (Arhgap39-002) 76723985-76818083 protein_coding
ENSMUST00000077821 (Arhgap39-001) 76723985-76818170 protein_coding
ENSMUST00000175843 (Arhgap39-004) 76765522-76817970 protein_coding
ENSMUST00000176219 (Arhgap39-009) 76758041-76818106 protein_coding
ENSMUST00000176724 (Arhgap39-010) 76724860-76725603 retained_intron
ENSMUST00000176736 (Arhgap39-005) 76765538-76818076 protein_coding
ENSMUST00000176855 (Arhgap39-007) 76751677-76794825 protein_coding
ENSMUST00000177011 (Arhgap39-003) 76733457-76818129 retained_intron
ENSMUST00000177026 (Arhgap39-008) 76758045-76817996 protein_coding
ENSMUST00000177255 (Arhgap39-006) 76765072-76818141 retained_intron
ENSMUSG00000090429 (Gm17271)
predicted gene, 17271 		ENSMUST00000165535 (Gm17271-001) 76797696-76798050 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VV_0001ENSG00000147799ENST00000276826ENST00000377307ENST00000528810ENSG00000198169ENST00000292562ENST00000524394ENST00000525191ENST00000530353ENSG00000254533ENST00000525376ENSG00000255085ENST00000524514ENST00000528794ENST00000529026ENST00000578723ENST00000581667ENSG00000255456ENST00000529377ENSG00000263612ENST00000583427ENSG00000274772ENST00000617099CIL_0000VV_0002ENSMUSG00000022526ENSMUST00000080406ENSMUSG00000033697ENSMUST00000036176ENSMUST00000077821ENSMUST00000175843ENSMUST00000176219ENSMUST00000176724ENSMUST00000176736ENSMUST00000176855ENSMUST00000177011ENSMUST00000177026ENSMUST00000177255ENSMUSG00000090429ENSMUST00000165535
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VV_0001ENSG00000147799ENST00000276826ENST00000377307ENST00000528810ENSG00000198169ENST00000292562ENST00000530353ENSG00000254533ENST00000525376ENSG00000255085ENST00000524514ENST00000528794ENST00000529026ENST00000578723ENST00000581667ENSG00000255456ENST00000529377ENSG00000263612ENST00000583427ENSG00000274772ENST00000617099CIL_0000VV_0002ENSMUSG00000022526ENSMUST00000080406ENSMUSG00000033697ENSMUST00000036176ENSMUST00000077821ENSMUST00000177011ENSMUSG00000090429ENSMUST00000165535
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147799 ENST00000276826 0.445±0.00 0.211±0.00 N/A 5.522±4.51 0.894±0.00 0.527±0.44 0.055±0.00 N/A 0.114±0.00 0.965±0.91 0.039±0.00 0.363±0.00 0.153±0.00 11.519±0.00
ENST00000377307 N/A 0.484±0.00 N/A 1.438±1.04 0.494±0.15 0.312±0.08 0.510±0.00 2.083±0.00 0.168±0.00 1.193±0.00 N/A 3.484±3.01 0.984±0.37 13.811±1.84
ENST00000528810 N/A N/A N/A N/A N/A N/A N/A 1.188±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000198169 ENST00000292562 1.421±0.00 3.731±0.00 N/A 1.943±1.12 1.495±0.99 1.877±0.18 0.751±0.37 2.564±1.31 0.829±0.28 1.895±0.48 0.689±0.42 3.716±2.08 1.345±0.30 4.009±1.24
ENST00000524394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530353 N/A N/A N/A N/A N/A 1.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254533 ENST00000525376 0.568±0.00 0.264±0.00 N/A 0.087±0.00 0.285±0.00 0.465±0.17 0.378±0.26 0.502±0.00 0.369±0.23 0.441±0.00 1.374±1.08 0.268±0.00 0.268±0.18 0.600±0.17
ENSG00000255085 ENST00000524514 N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A 0.057±0.00 0.269±0.00 2.354±0.00
ENST00000528794 N/A N/A N/A 0.378±0.21 0.335±0.00 0.462±0.19 0.548±0.22 0.343±0.00 0.282±0.25 N/A N/A 1.278±0.00 0.190±0.05 0.806±0.00
ENST00000529026 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578723 N/A 0.187±0.00 N/A N/A N/A N/A N/A 0.534±0.00 0.048±0.00 N/A N/A 1.048±0.00 N/A 0.783±0.00
ENST00000581667 0.113±0.00 0.099±0.00 N/A N/A 0.402±0.00 0.317±0.00 0.352±0.27 0.948±0.00 0.538±0.39 N/A N/A 0.045±0.00 0.133±0.03 N/A
ENSG00000255456 ENST00000529377 N/A 0.236±0.00 N/A 0.083±0.00 0.075±0.00 N/A N/A 0.116±0.00 N/A N/A N/A 0.056±0.00 N/A 0.037±0.00
ENSG00000263612 ENST00000583427 N/A 0.022±0.00 N/A 0.104±0.00 0.200±0.00 0.081±0.00 0.021±0.00 N/A N/A N/A N/A 0.077±0.02 N/A 2.745±1.86
ENSG00000274772 ENST00000617099 0.161±0.00 0.260±0.00 N/A 0.351±0.00 0.401±0.00 0.468±0.00 0.053±0.00 0.107±0.00 N/A 0.448±0.00 N/A 0.604±0.46 0.428±0.00 1.102±0.57
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022526 ENSMUST00000080406 1.961±0.63 5.940±1.80 N/A 4.421±0.00 3.020±1.49 2.541±0.61 2.373±0.92 3.056±0.52 0.450±0.15 3.250±1.02 0.859±0.35 7.068±1.73 1.546±1.03 2.031±0.87
ENSMUSG00000033697 ENSMUST00000036176 2.384±1.20 1.529±0.79 2.357±0.15 N/A 2.071±0.00 3.577±1.02 0.468±0.00 1.712±0.63 1.667±0.96 2.879±0.38 0.749±0.14 4.265±0.42 5.825±1.64 3.450±0.98
ENSMUST00000077821 3.077±1.51 5.658±1.54 0.874±0.03 17.038±10.43 3.713±2.01 10.751±2.60 1.143±0.43 1.339±0.48 1.132±0.59 3.788±1.82 0.260±0.06 11.330±2.67 1.306±0.13 4.341±2.10
ENSMUST00000175843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177011 N/A N/A N/A 5.081±0.00 N/A N/A N/A N/A N/A N/A 0.206±0.00 3.244±0.30 N/A N/A
ENSMUST00000177026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090429 ENSMUST00000165535 N/A N/A 0.064±0.02 N/A N/A 0.233±0.00 N/A 0.273±0.00 0.068±0.03 0.181±0.00 N/A 0.701±0.00 N/A 0.471±0.00

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