C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000WP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061205-ENSDARG00000038910 CGP 7955 2:24788976-24889786
GeneTranscriptPositionBiotype
ENSDARG00000038910 (pccb)
propionyl Coenzyme A carboxylase, beta polypeptide 		ENSDART00000099340 (pccb-201) 24878275-24889609 protein_coding
ENSDART00000132549 (pccb-001) 24878158-24889786 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000WP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037286-ENSMUSG00000032527 CGP 10090 9:100597798-101034898
GeneTranscriptPositionBiotype
ENSMUSG00000032527 (Pccb)
propionyl Coenzyme A carboxylase, beta polypeptide 		ENSMUST00000035116 (Pccb-001) 100982032-101034898 protein_coding
ENSMUST00000142676 (Pccb-003) 100995562-101034867 protein_coding
ENSMUST00000145091 (Pccb-004) 101011973-101034850 processed_transcript
ENSMUST00000149322 (Pccb-002) 100982032-101034877 protein_coding
ENSMUST00000149998 (Pccb-005) 100984373-100985609 retained_intron
ENSMUST00000189498 (Pccb-006) 101023219-101034881 protein_coding
ENSMUSG00000037286 (Stag1)
stromal antigen 1 		ENSMUST00000041418 (Stag1-004) 100643613-100958544 protein_coding
ENSMUST00000122824 (Stag1-014) 100848161-100855814 retained_intron
ENSMUST00000123302 (Stag1-008) 100643768-100957406 nonsense_mediated_decay
ENSMUST00000123315 (Stag1-010) 100643613-100712690 retained_intron
ENSMUST00000124487 (Stag1-009) 100597798-100737996 protein_coding
ENSMUST00000129269 (Stag1-001) 100643448-100958545 protein_coding
ENSMUST00000133388 (Stag1-011) 100643770-100776795 protein_coding
ENSMUST00000138405 (Stag1-005) 100643616-100867293 nonsense_mediated_decay
ENSMUST00000143150 (Stag1-013) 100834474-100849183 retained_intron
ENSMUST00000143816 (Stag1-003) 100643600-100739597 retained_intron
ENSMUST00000143955 (Stag1-015) 100889608-100951680 protein_coding
ENSMUST00000144005 (Stag1-012) 100643613-100712709 retained_intron
ENSMUST00000146312 (Stag1-002) 100643448-100796791 protein_coding
ENSMUST00000146934 (Stag1-006) 100845050-100956834 protein_coding
ENSMUST00000149771 (Stag1-016) 100796704-100957416 processed_transcript
ENSMUST00000155108 (Stag1-007) 100643636-100957399 nonsense_mediated_decay
ENSMUST00000191345 (Stag1-017) 100955769-100959375 retained_intron
ENSMUSG00000086225 (Gm8661)
predicted gene 8661 		ENSMUST00000118688 (Gm8661-001) 100624974-100625965 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WP_0001ENSDARG00000038910ENSDART00000099340ENSDART00000132549CIL_0000WP_0002ENSMUSG00000032527ENSMUST00000035116ENSMUST00000142676ENSMUST00000145091ENSMUST00000149322ENSMUST00000149998ENSMUST00000189498ENSMUSG00000037286ENSMUST00000041418ENSMUST00000122824ENSMUST00000123302ENSMUST00000123315ENSMUST00000124487ENSMUST00000129269ENSMUST00000133388ENSMUST00000138405ENSMUST00000143150ENSMUST00000143816ENSMUST00000143955ENSMUST00000144005ENSMUST00000146312ENSMUST00000146934ENSMUST00000149771ENSMUST00000155108ENSMUST00000191345ENSMUSG00000086225ENSMUST00000118688
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WP_0001ENSDARG00000038910ENSDART00000099340ENSDART00000132549CIL_0000WP_0002ENSMUSG00000032527ENSMUST00000035116ENSMUST00000142676ENSMUST00000145091ENSMUST00000149322ENSMUSG00000037286ENSMUST00000041418ENSMUST00000129269ENSMUST00000133388ENSMUST00000143955ENSMUST00000144005ENSMUST00000146312ENSMUST00000146934ENSMUST00000149771ENSMUST00000191345ENSMUSG00000086225ENSMUST00000118688
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038910 ENSDART00000099340 N/A N/A N/A 15.945±0.00 N/A N/A 37.129±9.61 11.686±0.00 2.368±0.00 N/A 4.290±0.00 N/A N/A N/A
ENSDART00000132549 N/A N/A N/A 15.954±0.45 N/A N/A 47.330±5.35 N/A 2.684±0.00 N/A 13.470±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032527 ENSMUST00000035116 91.306±23.06 98.071±9.40 25.638±3.07 15.961±5.72 78.334±9.68 80.863±1.77 54.982±2.16 169.617±16.54 63.028±42.87 34.492±1.42 34.770±1.16 41.356±12.86 12.339±7.81 5.152±0.18
ENSMUST00000142676 N/A 40.611±3.31 N/A N/A 52.886±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.458±0.00
ENSMUST00000149322 N/A N/A N/A 8.271±0.00 N/A N/A N/A N/A N/A N/A N/A 14.467±0.00 5.306±0.34 N/A
ENSMUST00000149998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037286 ENSMUST00000041418 0.900±0.13 N/A N/A N/A 0.528±0.10 0.726±0.14 0.622±0.15 0.725±0.33 1.199±0.41 1.250±0.27 0.593±0.00 1.733±0.71 4.248±1.99 N/A
ENSMUST00000122824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129269 2.587±0.40 0.348±0.16 5.631±0.54 7.305±3.21 1.610±0.66 0.473±0.10 1.392±0.49 1.682±0.53 3.303±1.81 1.787±0.41 3.135±0.35 2.352±2.32 7.372±2.15 2.189±0.19
ENSMUST00000133388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.218±0.00
ENSMUST00000138405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143955 N/A N/A N/A N/A N/A N/A N/A N/A 1.514±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144005 N/A 2.820±0.00 N/A N/A N/A 2.755±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146312 N/A 1.315±0.56 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146934 N/A 1.838±0.00 1.895±0.00 10.858±0.00 0.627±0.00 0.992±0.26 0.641±0.05 0.569±0.00 1.470±0.79 0.919±0.00 0.845±0.00 6.294±9.47 15.255±14.13 4.094±3.89
ENSMUST00000149771 N/A 1.342±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.550±0.30 5.005±0.00 N/A
ENSMUST00000155108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191345 N/A 0.931±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.004±0.00 N/A N/A
ENSMUSG00000086225 ENSMUST00000118688 0.029±0.00 N/A 0.015±0.00 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.17 0.096±0.05

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