C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000WR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171940-ENSG00000064787 CGP 9606 20:53567065-54070594
GeneTranscriptPositionBiotype
ENSG00000064787 (BCAS1)
breast carcinoma amplified sequence 1 		ENST00000371435 (BCAS1-003) 53943541-54070545 protein_coding
ENST00000371440 (BCAS1-201) 53943978-54070545 protein_coding
ENST00000395961 (BCAS1-001) 53943541-54070594 protein_coding
ENST00000422805 (BCAS1-004) 53944783-53995929 protein_coding
ENST00000448484 (BCAS1-002) 53936777-54028700 protein_coding
ENSG00000171940 (ZNF217)
zinc finger protein 217 		ENST00000302342 (ZNF217-201) 53567073-53583097 protein_coding
ENST00000371471 (ZNF217-001) 53567065-53593839 protein_coding
ENST00000431687 (ZNF217-004) 53582542-53608892 protein_coding
ENST00000437222 (ZNF217-002) 53568820-53576027 protein_coding
ENST00000540425 (ZNF217-003) 53582925-53609907 processed_transcript
ENSG00000197670 (RP4-724E16.2)
 ENST00000424252 (RP4-724E16.2-001) 53552770-53575308 antisense
ENSG00000236352 (AC005220.3)
 ENST00000450473 (AC005220.3-001) 53940160-53942508 antisense
ENSG00000241721 (SUMO1P1)
SUMO1 pseudogene 1 		ENST00000497904 (SUMO1P1-001) 53875252-53875557 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000WR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052056-ENSMUSG00000013523 CGP 10090 2:170108643-170427845
GeneTranscriptPositionBiotype
ENSMUSG00000013523 (Bcas1)
breast carcinoma amplified sequence 1 		ENSMUST00000013667 (Bcas1-001) 170347148-170427828 protein_coding
ENSMUST00000068137 (Bcas1-003) 170347144-170427845 protein_coding
ENSMUST00000109152 (Bcas1-201) 170346991-170427845 protein_coding
ENSMUST00000133673 (Bcas1-004) 170347945-170357113 processed_transcript
ENSMUST00000145920 (Bcas1-002) 170397532-170427845 processed_transcript
ENSMUST00000147577 (Bcas1-006) 170386971-170388003 processed_transcript
ENSMUST00000152461 (Bcas1-007) 170348089-170349795 processed_transcript
ENSMUST00000154650 (Bcas1-005) 170346991-170406509 protein_coding
ENSMUST00000156657 (Bcas1-008) 170347931-170349740 processed_transcript
ENSMUSG00000052056 (Zfp217)
zinc finger protein 217 		ENSMUST00000063710 (Zfp217-201) 170108643-170131220 protein_coding
ENSMUST00000109155 (Zfp217-001) 170108646-170142678 protein_coding
ENSMUST00000125162 (Zfp217-004) 170120619-170133945 processed_transcript
ENSMUST00000149088 (Zfp217-002) 170120333-170131220 processed_transcript
ENSMUST00000149318 (Zfp217-003) 170120719-170148103 processed_transcript
ENSMUSG00000084013 (Gm14270)
predicted gene 14270 		ENSMUST00000118388 (Gm14270-001) 170285035-170285880 processed_pseudogene
ENSMUSG00000086999 (Bcas1os2)
breast carcinoma amplified sequence 1, opposite strand 2 		ENSMUST00000131931 (Bcas1os2-001) 170356361-170380435 antisense
ENSMUSG00000097514 (Gm17619)
predicted gene, 17619 		ENSMUST00000180625 (Gm17619-201) 170192449-170194053 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WR_0001ENSG00000064787ENST00000371435ENST00000371440ENST00000395961ENST00000422805ENST00000448484ENSG00000171940ENST00000302342ENST00000371471ENST00000431687ENST00000437222ENST00000540425ENSG00000197670ENST00000424252ENSG00000236352ENST00000450473ENSG00000241721ENST00000497904CIL_0000WR_0002ENSMUSG00000013523ENSMUST00000013667ENSMUST00000068137ENSMUST00000109152ENSMUST00000133673ENSMUST00000145920ENSMUST00000147577ENSMUST00000152461ENSMUST00000154650ENSMUST00000156657ENSMUSG00000052056ENSMUST00000063710ENSMUST00000109155ENSMUST00000125162ENSMUST00000149088ENSMUST00000149318ENSMUSG00000084013ENSMUST00000118388ENSMUSG00000086999ENSMUST00000131931ENSMUSG00000097514ENSMUST00000180625
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WR_0001ENSG00000064787ENST00000371435ENST00000371440ENST00000395961ENST00000422805ENST00000448484ENSG00000171940ENST00000302342ENST00000371471ENST00000437222ENSG00000197670ENST00000424252ENSG00000236352ENST00000450473ENSG00000241721ENST00000497904CIL_0000WR_0002ENSMUSG00000013523ENSMUST00000013667ENSMUST00000068137ENSMUST00000109152ENSMUST00000133673ENSMUST00000145920ENSMUST00000147577ENSMUST00000152461ENSMUST00000154650ENSMUST00000156657ENSMUSG00000052056ENSMUST00000063710ENSMUST00000109155ENSMUST00000149088ENSMUSG00000084013ENSMUST00000118388ENSMUSG00000086999ENSMUST00000131931ENSMUSG00000097514ENSMUST00000180625
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064787 ENST00000371435 N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A 0.088±0.00 0.819±0.00 N/A 0.280±0.00 0.057±0.01 1.650±0.00
ENST00000371440 N/A N/A 0.793±0.00 N/A 1.844±1.81 3.136±0.00 0.023±0.00 0.295±0.00 N/A N/A 0.121±0.02 0.299±0.16 0.057±0.00 1.186±0.22
ENST00000395961 N/A 0.196±0.00 N/A N/A 6.031±0.00 3.000±2.21 N/A 0.349±0.00 1.503±0.00 0.885±0.28 N/A 0.566±0.60 0.163±0.00 N/A
ENST00000422805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A 0.092±0.00 N/A
ENST00000448484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A
ENSG00000171940 ENST00000302342 3.647±0.00 6.442±0.00 N/A 0.820±0.00 5.531±0.00 2.895±0.28 0.814±0.51 3.640±1.86 3.070±0.43 2.931±0.38 0.785±0.50 4.546±1.57 3.667±1.30 10.362±1.28
ENST00000371471 4.718±0.00 N/A N/A 0.228±0.09 2.345±0.00 N/A N/A N/A 0.794±0.00 N/A N/A 2.243±0.11 0.397±0.06 1.819±0.00
ENST00000431687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.827±0.00 6.903±0.00 7.235±0.00 N/A
ENST00000540425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197670 ENST00000424252 0.257±0.00 N/A N/A 0.225±0.21 0.561±0.00 0.436±0.00 0.176±0.00 0.386±0.00 0.191±0.00 0.179±0.00 0.169±0.10 0.131±0.03 0.061±0.03 0.118±0.04
ENSG00000236352 ENST00000450473 N/A N/A N/A N/A 0.121±0.00 N/A 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000241721 ENST00000497904 N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 0.156±0.00 0.179±0.03 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000013523 ENSMUST00000013667 0.052±0.00 N/A 0.511±0.00 N/A 0.127±0.06 N/A N/A N/A 0.655±0.46 0.090±0.00 N/A 0.636±0.41 0.119±0.00 N/A
ENSMUST00000068137 N/A N/A N/A 1.121±0.41 N/A N/A N/A 0.039±0.00 0.462±0.00 N/A N/A 0.622±0.25 0.064±0.00 N/A
ENSMUST00000109152 0.068±0.02 N/A 1.043±0.21 N/A N/A 10.775±1.19 0.036±0.00 N/A 0.825±0.41 0.148±0.04 N/A 0.392±0.19 0.385±0.09 N/A
ENSMUST00000133673 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.328±0.00 0.460±0.00 N/A 8.259±1.15
ENSMUST00000145920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.14 N/A N/A
ENSMUST00000147577 N/A N/A N/A N/A 0.715±0.38 N/A 0.198±0.00 N/A 0.134±0.00 N/A N/A N/A N/A N/A
ENSMUST00000152461 0.407±0.00 N/A N/A N/A 0.360±0.00 N/A 0.354±0.12 0.191±0.08 N/A 1.084±0.33 0.580±0.00 0.961±0.00 0.350±0.18 N/A
ENSMUST00000154650 0.097±0.04 0.080±0.00 N/A 24.675±33.26 0.218±0.12 N/A 0.054±0.04 0.050±0.05 0.049±0.00 N/A 0.316±0.10 0.187±0.00 0.057±0.01 N/A
ENSMUST00000156657 0.277±0.02 N/A N/A N/A 0.392±0.17 N/A 0.257±0.00 0.147±0.00 N/A 0.551±0.00 N/A 0.453±0.00 0.145±0.00 N/A
ENSMUSG00000052056 ENSMUST00000063710 2.676±0.57 4.947±1.81 4.301±0.09 1.227±0.66 6.369±2.61 2.575±0.39 1.191±0.69 3.013±0.41 1.075±0.40 3.828±0.98 1.211±0.32 3.449±1.60 2.837±0.71 7.792±0.61
ENSMUST00000109155 3.851±1.92 3.087±1.33 0.496±0.00 0.488±0.00 7.371±0.99 1.621±0.00 1.342±0.34 0.794±0.01 0.631±0.34 3.494±1.23 0.383±0.14 3.352±1.34 4.248±0.00 N/A
ENSMUST00000125162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149088 N/A 7.730±0.00 N/A N/A 11.159±0.00 N/A N/A N/A 1.943±0.00 N/A N/A 7.306±0.00 N/A N/A
ENSMUST00000149318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084013 ENSMUST00000118388 1.287±0.20 2.163±1.12 0.265±0.10 0.444±0.05 0.690±0.23 0.405±0.15 0.653±0.14 1.863±0.70 1.492±0.95 0.538±0.05 0.176±0.08 1.142±0.77 0.157±0.11 1.407±0.73
ENSMUSG00000086999 ENSMUST00000131931 N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A 0.213±0.00 0.054±0.00 0.959±0.00
ENSMUSG00000097514 ENSMUST00000180625 0.071±0.03 N/A 0.069±0.01 0.068±0.04 0.092±0.03 0.226±0.07 N/A N/A 0.135±0.09 0.081±0.03 0.015±0.00 0.156±0.07 0.064±0.03 N/A

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