C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000XQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198612-ENSG00000163359 CGP 9606 2:237085312-237414375
GeneTranscriptPositionBiotype
ENSG00000163359 (COL6A3)
collagen, type VI, alpha 3 		ENST00000295550 (COL6A3-001) 237324012-237414375 protein_coding
ENST00000347401 (COL6A3-201) 237324085-237414148 protein_coding
ENST00000353578 (COL6A3-202) 237324012-237414207 protein_coding
ENST00000392003 (COL6A3-003) 237371617-237414207 protein_coding
ENST00000392004 (COL6A3-002) 237371617-237414177 protein_coding
ENST00000409809 (COL6A3-011) 237324774-237396817 protein_coding
ENST00000433762 (COL6A3-008) 237377118-237414177 protein_coding
ENST00000468792 (COL6A3-010) 237338940-237340602 retained_intron
ENST00000472056 (COL6A3-012) 237324085-237414148 protein_coding
ENST00000473258 (COL6A3-005) 237324003-237330180 processed_transcript
ENST00000491233 (COL6A3-004) 237386454-237388077 protein_coding
ENST00000491769 (COL6A3-009) 237324019-237355779 retained_intron
ENST00000493475 (COL6A3-007) 237356790-237357883 retained_intron
ENST00000493608 (COL6A3-006) 237332968-237334786 processed_transcript
ENSG00000198612 (COPS8)
COP9 signalosome subunit 8 		ENST00000354371 (COPS8-001) 237085312-237100466 protein_coding
ENST00000392008 (COPS8-002) 237085882-237098618 protein_coding
ENST00000409334 (COPS8-008) 237085884-237097933 protein_coding
ENST00000419015 (COPS8-005) 237085909-237094186 nonsense_mediated_decay
ENST00000447464 (COPS8-007) 237094139-237099143 nonsense_mediated_decay
ENST00000465362 (COPS8-006) 237096678-237098160 retained_intron
ENST00000470452 (COPS8-003) 237085886-237095881 retained_intron
ENSG00000224132 (AC112715.2)
 ENST00000445534 (AC112715.2-001) 237257091-237257676 lincRNA
ENSG00000224844 (AC107079.1)
 ENST00000416509 (AC107079.1-001) 237122910-237124097 lincRNA
ENSG00000227252 (AC105760.2)
 ENST00000418430 (AC105760.2-001) 237059434-237085817 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0000XQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034432-ENSMUSG00000048126 CGP 10090 1:90602981-90843971
GeneTranscriptPositionBiotype
ENSMUSG00000034432 (Cops8)
COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana) 		ENSMUST00000036153 (Cops8-001) 90602981-90613341 protein_coding
ENSMUST00000186152 (Cops8-009) 90603499-90611037 processed_transcript
ENSMUST00000186750 (Cops8-008) 90603528-90612180 protein_coding
ENSMUST00000186882 (Cops8-007) 90611580-90612622 protein_coding
ENSMUST00000189107 (Cops8-006) 90611346-90612393 retained_intron
ENSMUST00000189309 (Cops8-004) 90603478-90611466 retained_intron
ENSMUST00000190057 (Cops8-003) 90603499-90605658 retained_intron
ENSMUST00000190700 (Cops8-005) 90609654-90611328 retained_intron
ENSMUST00000191510 (Cops8-002) 90603476-90613124 retained_intron
ENSMUSG00000048126 (Col6a3)
collagen, type VI, alpha 3 		ENSMUST00000056925 (Col6a3-201) 90765923-90843971 protein_coding
ENSMUST00000097653 (Col6a3-001) 90766860-90843952 protein_coding
ENSMUST00000130846 (Col6a3-002) 90802473-90843928 protein_coding
ENSMUST00000136916 (Col6a3-004) 90791467-90807982 retained_intron
ENSMUST00000145750 (Col6a3-003) 90793892-90794721 retained_intron
ENSMUST00000150769 (Col6a3-005) 90767389-90773215 retained_intron
ENSMUST00000187753 (Col6a3-006) 90822271-90843971 protein_coding
ENSMUST00000188587 (Col6a3-202) 90765923-90843971 protein_coding
ENSMUSG00000056128 (Gm9991)
predicted gene 9991 		ENSMUST00000070048 (Gm9991-001) 90675161-90679793 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XQ_0001ENSG00000163359ENST00000295550ENST00000347401ENST00000353578ENST00000392003ENST00000392004ENST00000409809ENST00000433762ENST00000468792ENST00000472056ENST00000473258ENST00000491233ENST00000491769ENST00000493475ENST00000493608ENSG00000198612ENST00000354371ENST00000392008ENST00000409334ENST00000419015ENST00000447464ENST00000465362ENST00000470452ENSG00000224132ENST00000445534ENSG00000224844ENST00000416509ENSG00000227252ENST00000418430CIL_0000XQ_0002ENSMUSG00000034432ENSMUST00000036153ENSMUST00000186152ENSMUST00000186750ENSMUST00000186882ENSMUST00000189107ENSMUST00000189309ENSMUST00000190057ENSMUST00000190700ENSMUST00000191510ENSMUSG00000048126ENSMUST00000056925ENSMUST00000097653ENSMUST00000130846ENSMUST00000136916ENSMUST00000145750ENSMUST00000150769ENSMUST00000187753ENSMUST00000188587ENSMUSG00000056128ENSMUST00000070048
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XQ_0001ENSG00000163359ENST00000295550ENST00000347401ENST00000353578ENST00000392003ENST00000472056ENST00000491769ENSG00000198612ENST00000354371ENST00000392008ENST00000409334ENST00000470452ENSG00000224132ENST00000445534ENSG00000224844ENST00000416509ENSG00000227252ENST00000418430CIL_0000XQ_0002ENSMUSG00000034432ENSMUST00000036153ENSMUST00000186750ENSMUST00000186882ENSMUST00000189309ENSMUST00000191510ENSMUSG00000048126ENSMUST00000056925ENSMUST00000097653ENSMUST00000136916ENSMUST00000150769ENSMUST00000188587ENSMUSG00000056128ENSMUST00000070048
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163359 ENST00000295550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.309±0.00 N/A N/A N/A
ENST00000347401 N/A N/A 1.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000353578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.261±0.00 N/A
ENST00000392003 N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472056 111.207±0.00 34.681±0.00 N/A 0.843±0.00 33.207±6.83 31.489±17.00 15.213±12.03 5.382±3.69 19.335±16.87 19.614±10.81 7.890±5.35 46.475±24.26 54.811±21.62 19.634±15.14
ENST00000473258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491769 N/A N/A 0.595±0.00 0.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.458±0.00
ENST00000493475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198612 ENST00000354371 1.005±0.00 N/A 0.703±0.00 2.972±1.23 N/A 0.851±0.49 0.450±0.00 1.295±0.41 0.725±0.35 1.048±0.18 N/A 1.668±0.00 1.268±0.00 N/A
ENST00000392008 12.223±0.00 11.398±0.00 N/A 18.048±6.03 7.641±5.30 8.996±7.35 13.257±10.84 9.700±8.04 3.959±1.93 7.247±5.62 16.953±12.22 15.281±9.16 23.611±3.87 30.327±1.62
ENST00000409334 N/A N/A N/A N/A 3.350±0.00 N/A 2.821±0.00 N/A 2.052±0.00 3.194±0.00 4.691±0.00 3.390±0.00 N/A 15.408±0.00
ENST00000419015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470452 N/A N/A N/A N/A N/A N/A N/A 1.056±0.00 N/A N/A N/A 6.509±0.00 N/A N/A
ENSG00000224132 ENST00000445534 0.197±0.00 0.212±0.00 N/A N/A 0.552±0.00 0.403±0.00 0.190±0.00 N/A 0.357±0.00 0.208±0.00 N/A 0.357±0.24 0.169±0.00 0.501±0.03
ENSG00000224844 ENST00000416509 N/A N/A N/A 0.099±0.00 0.479±0.00 0.056±0.00 0.030±0.00 N/A N/A N/A 1.017±0.92 0.209±0.12 0.079±0.00 0.015±0.00
ENSG00000227252 ENST00000418430 N/A N/A 0.944±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034432 ENSMUST00000036153 25.333±4.61 N/A 31.834±3.55 29.731±12.28 17.384±8.40 N/A 27.383±2.98 15.615±5.20 14.459±8.46 12.415±2.05 33.805±1.10 11.681±9.51 15.914±6.98 20.641±9.25
ENSMUST00000186152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186750 N/A N/A N/A 49.567±0.00 N/A N/A N/A N/A N/A N/A N/A 33.237±0.00 31.117±5.66 17.667±0.00
ENSMUST00000186882 N/A N/A N/A 45.017±0.00 28.785±0.00 N/A N/A N/A N/A N/A N/A 39.618±1.64 39.080±8.56 10.750±0.00
ENSMUST00000189107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189309 8.275±0.00 6.492±0.72 N/A N/A 9.779±2.36 6.413±0.51 N/A N/A 3.492±0.62 10.497±1.36 N/A 12.551±2.82 7.455±1.00 2.645±0.00
ENSMUST00000190057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191510 6.850±2.99 19.765±1.28 N/A N/A 14.360±6.71 9.328±3.55 N/A 17.300±0.00 8.209±3.03 15.754±5.06 N/A 19.734±4.88 N/A 0.879±0.00
ENSMUSG00000048126 ENSMUST00000056925 N/A N/A N/A 0.051±0.00 N/A 2.583±0.00 N/A 0.765±0.01 N/A 5.904±1.14 N/A 9.044±4.65 0.976±0.00 N/A
ENSMUST00000097653 64.917±33.94 2.333±1.18 34.579±0.30 1.384±1.33 29.153±10.35 17.302±6.83 4.882±1.03 3.596±1.09 0.912±0.54 19.685±0.13 2.876±1.24 29.098±14.05 5.875±7.46 1.015±0.50
ENSMUST00000130846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136916 N/A N/A N/A 0.279±0.00 N/A N/A N/A N/A N/A N/A N/A 17.734±0.00 1.063±0.00 0.459±0.00
ENSMUST00000145750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 53.127±0.00 5.163±3.45 1.856±0.00
ENSMUST00000187753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188587 N/A 2.446±1.03 N/A N/A 15.616±1.18 10.065±0.00 N/A N/A N/A 14.647±0.29 N/A 21.594±0.50 N/A N/A
ENSMUSG00000056128 ENSMUST00000070048 0.146±0.14 N/A 0.043±0.01 0.013±0.01 N/A N/A N/A 0.029±0.00 0.008±0.00 0.071±0.00 0.035±0.00 0.173±0.08 0.047±0.01 N/A

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