C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000YI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060152-ENSDARG00000074591 CGP 7955 5:38016141-38099193
GeneTranscriptPositionBiotype
ENSDARG00000060152 (fam155b)
family with sequence similarity 155, member B 		ENSDART00000084464 (fam155b-001) 38016141-38022325 protein_coding
ENSDARG00000074591 (eda)
ectodysplasin A 		ENSDART00000102973 (eda-001) 38039568-38099193 protein_coding
ENSDART00000103020 (eda-201) 38039568-38099193 protein_coding
CIL_0000YI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130054-ENSG00000158813 CGP 9606 X:69505241-70039469
GeneTranscriptPositionBiotype
ENSG00000130054 (FAM155B)
family with sequence similarity 155, member B 		ENST00000252338 (FAM155B-001) 69505241-69532508 protein_coding
ENSG00000211991 (MIR676)
microRNA 676 		ENST00000390702 (MIR676-201) 70022829-70022939 miRNA
ENSG00000212434 (U3)
Small nucleolar RNA U3 		ENST00000391132 (U3.1-226) 69692956-69693155 snoRNA
ENSG00000233229 (CNOT7P1)
CCR4-NOT transcription complex, subunit 7 pseudogene 1 		ENST00000429006 (CNOT7P1-001) 69937166-69938017 processed_pseudogene
ENSG00000272351 (5S_rRNA)
5S ribosomal RNA 		ENST00000606950 (5S_rRNA.1-213) 69672479-69672597 rRNA
CIL_0000YI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071719-ENSMUSG00000059327 CGP 10090 X:99821021-100400762
GeneTranscriptPositionBiotype
ENSMUSG00000071719 (Tmem28)
transmembrane protein 28 		ENSMUST00000096363 (Tmem28-001) 99821021-99848790 protein_coding
ENSMUSG00000080813 (Gm14828)
predicted gene 14828 		ENSMUST00000119381 (Gm14828-001) 100337514-100338668 processed_pseudogene
ENSMUSG00000082907 (Gm14832)
predicted gene 14832 		ENSMUST00000121289 (Gm14832-001) 100156635-100156956 processed_pseudogene
ENSMUSG00000083936 (Gm14829)
predicted gene 14829 		ENSMUST00000121499 (Gm14829-001) 100329692-100330829 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YI_0001ENSDARG00000060152ENSDART00000084464ENSDARG00000074591ENSDART00000102973ENSDART00000103020CIL_0000YI_0002ENSG00000130054ENST00000252338ENSG00000211991ENST00000390702ENSG00000212434ENST00000391132ENSG00000233229ENST00000429006ENSG00000272351ENST00000606950CIL_0000YI_0003ENSMUSG00000071719ENSMUST00000096363ENSMUSG00000080813ENSMUST00000119381ENSMUSG00000082907ENSMUST00000121289ENSMUSG00000083936ENSMUST00000121499
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YI_0001ENSDARG00000060152ENSDART00000084464ENSDARG00000074591ENSDART00000102973ENSDART00000103020CIL_0000YI_0002ENSG00000130054ENST00000252338ENSG00000211991ENST00000390702ENSG00000212434ENST00000391132ENSG00000233229ENST00000429006ENSG00000272351ENST00000606950CIL_0000YI_0003ENSMUSG00000071719ENSMUST00000096363ENSMUSG00000080813ENSMUST00000119381ENSMUSG00000082907ENSMUST00000121289ENSMUSG00000083936ENSMUST00000121499
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060152 ENSDART00000084464 N/A N/A N/A 7.037±7.42 N/A N/A 0.295±0.00 N/A 0.084±0.00 N/A 0.918±0.00 N/A N/A N/A
ENSDARG00000074591 ENSDART00000102973 N/A N/A N/A 0.144±0.12 N/A N/A 0.226±0.01 0.140±0.00 N/A N/A 0.257±0.00 N/A N/A N/A
ENSDART00000103020 N/A N/A N/A 0.144±0.12 N/A N/A 0.226±0.01 0.140±0.00 N/A N/A 0.257±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130054 ENST00000252338 N/A 0.028±0.00 0.176±0.00 0.392±0.20 0.046±0.02 0.036±0.01 7.648±7.07 1.359±0.00 0.119±0.00 0.132±0.00 0.100±0.00 0.211±0.15 0.039±0.01 1.721±0.04
ENSG00000211991 ENST00000390702 N/A N/A N/A N/A N/A N/A 0.329±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000212434 ENST00000391132 N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000233229 ENST00000429006 N/A N/A N/A 0.013±0.00 N/A 0.011±0.00 N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A
ENSG00000272351 ENST00000606950 N/A N/A N/A N/A 0.245±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000071719 ENSMUST00000096363 0.039±0.02 1.139±0.18 0.050±0.01 2.680±0.25 0.774±0.22 0.159±0.07 0.021±0.00 0.440±0.04 0.008±0.01 1.252±0.38 0.041±0.02 0.191±0.07 0.017±0.00 0.083±0.03
ENSMUSG00000080813 ENSMUST00000119381 0.032±0.00 N/A 0.013±0.00 0.017±0.01 0.035±0.00 N/A 0.043±0.01 N/A 0.017±0.01 N/A N/A N/A 0.004±0.00 1.553±0.24
ENSMUSG00000082907 ENSMUST00000121289 0.192±0.00 0.215±0.00 0.087±0.03 0.149±0.00 N/A N/A N/A 0.172±0.00 0.059±0.01 0.392±0.00 0.316±0.00 N/A 0.075±0.00 N/A
ENSMUSG00000083936 ENSMUST00000121499 0.057±0.03 N/A 0.019±0.01 0.043±0.00 0.039±0.00 0.053±0.00 0.058±0.03 0.061±0.00 0.026±0.03 0.087±0.01 N/A 0.127±0.01 0.031±0.02 N/A

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