C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00011L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157766-ENSG00000140511 CGP 9606 15:88803443-88895626
GeneTranscriptPositionBiotype
ENSG00000140511 (HAPLN3)
hyaluronan and proteoglycan link protein 3
ENST00000359595 (HAPLN3-001) 88877288-88895626 protein_coding
ENST00000558770 (HAPLN3-002) 88877295-88895531 nonsense_mediated_decay
ENST00000562281 (HAPLN3-004) 88879119-88895533 protein_coding
ENST00000562889 (HAPLN3-003) 88877831-88895597 protein_coding
ENST00000563808 (HAPLN3-005) 88881145-88895513 retained_intron
ENSG00000157766 (ACAN)
aggrecan
ENST00000352105 (ACAN-004) 88803759-88874653 protein_coding
ENST00000439576 (ACAN-201) 88803443-88875354 protein_coding
ENST00000558207 (ACAN-001) 88803474-88851521 protein_coding
ENST00000558604 (ACAN-002) 88873713-88874841 retained_intron
ENST00000558704 (ACAN-003) 88872969-88874841 protein_coding
ENST00000559004 (ACAN-008) 88803759-88874572 protein_coding
ENST00000560601 (ACAN-005) 88859076-88871490 protein_coding
ENST00000561243 (ACAN-006) 88836207-88874481 protein_coding
ENST00000617301 (ACAN-202) 88803443-88875354 protein_coding
CIL_00011L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030607-ENSMUSG00000030606 CGP 10090 7:79053483-79131018
GeneTranscriptPositionBiotype
ENSMUSG00000030606 (Hapln3)
hyaluronan and proteoglycan link protein 3
ENSMUST00000032827 (Hapln3-201) 79117027-79131018 protein_coding
ENSMUSG00000030607 (Acan)
aggrecan
ENSMUST00000032835 (Acan-201) 79053483-79115099 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011L_0001ENSG00000140511ENST00000359595ENST00000558770ENST00000562281ENST00000562889ENST00000563808ENSG00000157766ENST00000352105ENST00000439576ENST00000558207ENST00000558604ENST00000558704ENST00000559004ENST00000560601ENST00000561243ENST00000617301CIL_00011L_0002ENSMUSG00000030606ENSMUST00000032827ENSMUSG00000030607ENSMUST00000032835
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011L_0001ENSG00000140511ENST00000359595ENST00000558770ENST00000562281ENST00000562889ENST00000563808ENSG00000157766ENST00000352105ENST00000439576ENST00000558207ENST00000558604ENST00000558704ENST00000559004ENST00000561243ENST00000617301CIL_00011L_0002ENSMUSG00000030606ENSMUST00000032827ENSMUSG00000030607ENSMUST00000032835
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140511 ENST00000359595 3.547±0.00 12.930±0.00 N/A 0.894±0.00 2.202±0.00 1.453±1.39 N/A 0.457±0.00 0.027±0.00 17.031±0.00 0.862±0.00 3.261±1.91 5.861±4.12 4.307±0.00
ENST00000558770 0.365±0.00 N/A N/A 0.341±0.00 2.514±0.00 0.160±0.00 0.062±0.00 0.203±0.00 0.027±0.00 1.558±1.08 0.281±0.00 0.774±0.39 N/A 0.254±0.14
ENST00000562281 N/A N/A N/A 0.059±0.00 4.635±0.00 2.189±0.00 1.307±0.00 N/A 0.235±0.00 N/A N/A 4.825±0.00 2.183±0.00 0.305±0.00
ENST00000562889 1.577±0.00 N/A N/A 0.504±0.00 N/A 0.783±0.00 N/A N/A N/A N/A N/A N/A 1.473±0.00 0.318±0.00
ENST00000563808 N/A N/A N/A N/A 0.906±0.00 N/A 0.105±0.00 N/A 1.796±0.00 N/A 1.194±0.00 1.251±0.00 N/A 0.286±0.00
ENSG00000157766 ENST00000352105 N/A N/A N/A N/A 0.186±0.00 N/A 0.005±0.00 N/A N/A N/A 0.061±0.00 0.324±0.00 N/A N/A
ENST00000439576 N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A N/A 0.092±0.00 N/A
ENST00000558207 0.073±0.00 N/A N/A 0.133±0.00 0.041±0.00 0.063±0.00 0.075±0.00 N/A 0.031±0.00 N/A 0.098±0.06 N/A N/A N/A
ENST00000558604 N/A N/A N/A N/A 0.147±0.00 0.130±0.00 N/A 0.195±0.00 0.921±0.00 N/A N/A 1.406±0.00 1.090±0.00 N/A
ENST00000558704 N/A 1.700±0.00 1.014±0.00 0.474±0.00 N/A 0.467±0.00 N/A 0.214±0.00 N/A 3.909±0.00 0.364±0.00 N/A N/A 3.551±0.00
ENST00000559004 N/A N/A N/A N/A 0.068±0.00 N/A 0.001±0.00 N/A N/A N/A 0.071±0.00 N/A 0.200±0.00 N/A
ENST00000560601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561243 0.040±0.00 N/A N/A 0.051±0.00 N/A N/A 0.002±0.00 N/A N/A 0.405±0.00 0.117±0.00 0.088±0.00 0.099±0.00 N/A
ENST00000617301 0.042±0.00 0.558±0.00 0.110±0.00 0.191±0.00 0.019±0.00 0.175±0.00 N/A 1.261±0.00 0.186±0.00 0.677±0.00 N/A 0.732±0.40 0.253±0.12 0.816±0.44
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030606 ENSMUST00000032827 1.375±0.53 1.097±0.25 0.288±0.00 1.439±1.25 0.874±0.38 0.748±0.27 0.406±0.15 1.159±0.15 0.107±0.12 0.626±0.52 0.142±0.13 0.884±0.42 5.915±1.64 0.400±0.10
ENSMUSG00000030607 ENSMUST00000032835 0.019±0.02 0.641±0.41 N/A 0.524±0.49 0.011±0.00 0.005±0.00 0.112±0.08 0.003±0.00 0.008±0.01 0.104±0.09 0.009±0.00 0.326±0.12 0.294±0.12 0.093±0.03

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