C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00014O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036875-ENSDARG00000012397 CGP 7955 23:31670535-31751076
GeneTranscriptPositionBiotype
ENSDARG00000012397 (eya4)
eyes absent homolog 4 (Drosophila) 		ENSDART00000126920 (eya4-201) 31678289-31745433 protein_coding
ENSDART00000131352 (eya4-002) 31678787-31745433 protein_coding
ENSDART00000133002 (eya4-004) 31678919-31745433 protein_coding
ENSDART00000138625 (eya4-003) 31678919-31745433 protein_coding
ENSDART00000143425 (eya4-001) 31678694-31751076 protein_coding
ENSDARG00000036875 (rps12)
ribosomal protein S12 		ENSDART00000053542 (rps12-001) 31670557-31674501 protein_coding
ENSDART00000138350 (rps12-002) 31670535-31674501 protein_coding
ENSDARG00000036876 (zgc:153284)
zgc:153284 		ENSDART00000053545 (zgc:153284-001) 31665074-31667342 protein_coding
ENSDART00000139590 (zgc:153284-003) 31666254-31667274 retained_intron
ENSDART00000140519 (zgc:153284-002) 31665072-31675103 protein_coding
ENSDARG00000081654 (SNORD101)
Small nucleolar RNA SNORD101 		ENSDART00000118159 (SNORD101.1-201) 31671852-31671927 snoRNA

Danio rerio Ensembl (Zv9)

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CIL_00014O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000112306-ENSG00000112319 CGP 9606 6:132814441-133532120
GeneTranscriptPositionBiotype
ENSG00000112306 (RPS12)
ribosomal protein S12 		ENST00000230050 (RPS12-001) 132814441-132817564 protein_coding
ENST00000484616 (RPS12-002) 132814569-132817564 retained_intron
ENSG00000112319 (EYA4)
EYA transcriptional coactivator and phosphatase 4 		ENST00000355167 (EYA4-201) 133241357-133532119 protein_coding
ENST00000355286 (EYA4-008) 133241418-133530874 protein_coding
ENST00000367895 (EYA4-001) 133241351-133532120 protein_coding
ENST00000421413 (EYA4-004) 133325211-133468569 processed_transcript
ENST00000430974 (EYA4-007) 133241351-133531413 protein_coding
ENST00000431403 (EYA4-011) 133274781-133529039 protein_coding
ENST00000441015 (EYA4-005) 133241373-133248853 processed_transcript
ENST00000452339 (EYA4-006) 133240598-133528902 protein_coding
ENST00000497350 (EYA4-003) 133462121-133462734 retained_intron
ENST00000525614 (EYA4-010) 133360205-133461125 processed_transcript
ENST00000525849 (EYA4-002) 133241631-133530226 protein_coding
ENST00000531861 (EYA4-012) 133274781-133512964 processed_transcript
ENST00000531901 (EYA4-009) 133241586-133529530 protein_coding
ENST00000532518 (EYA4-013) 133462713-133513029 processed_transcript
ENSG00000200534 (SNORA33)
small nucleolar RNA, H/ACA box 33 		ENST00000363664 (SNORA33-201) 132817219-132817348 snoRNA
ENSG00000206754 (SNORD101)
small nucleolar RNA, C/D box 101 		ENST00000384027 (SNORD101-201) 132815307-132815379 snoRNA
ENSG00000213122 (RPL23AP46)
ribosomal protein L23a pseudogene 46 		ENST00000438548 (RPL23AP46-001) 132997551-132998040 processed_pseudogene
ENSG00000220113 (MTCYBP4)
MT-CYB pseudogene 4 		ENST00000401524 (MTCYBP4-001) 133150568-133150816 processed_pseudogene
ENSG00000220557 (HMGB1P13)
high mobility group box 1 pseudogene 13 		ENST00000406019 (HMGB1P13-001) 132868218-132868859 processed_pseudogene
ENSG00000221500 (SNORD100)
small nucleolar RNA, C/D box 100 		ENST00000408573 (SNORD100-201) 132816802-132816877 snoRNA
ENSG00000223542 (RP1-283K11.3)
 ENST00000412954 (RP1-283K11.3-001) 133435077-133439464 antisense
ENSG00000231023 (LINC00326)
long intergenic non-protein coding RNA 326 		ENST00000434443 (LINC00326-001) 133088128-133106198 lincRNA
ENST00000457339 (LINC00326-002) 133088080-133106578 lincRNA
ENSG00000238059 (HSPE1P21)
heat shock 10kDa protein 1 pseudogene 21 		ENST00000438283 (HSPE1P21-001) 133510386-133510693 processed_pseudogene
ENSG00000279960 (RP5-1181K21.4)
 ENST00000623494 (RP5-1181K21.4-001) 132891924-132893819 TEC

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00014O_0001ENSDARG00000012397ENSDART00000126920ENSDART00000131352ENSDART00000133002ENSDART00000138625ENSDART00000143425ENSDARG00000036875ENSDART00000053542ENSDART00000138350ENSDARG00000036876ENSDART00000053545ENSDART00000139590ENSDART00000140519ENSDARG00000081654ENSDART00000118159CIL_00014O_0002ENSG00000112306ENST00000230050ENST00000484616ENSG00000112319ENST00000355167ENST00000355286ENST00000367895ENST00000421413ENST00000430974ENST00000431403ENST00000441015ENST00000452339ENST00000497350ENST00000525614ENST00000525849ENST00000531861ENST00000531901ENST00000532518ENSG00000200534ENST00000363664ENSG00000206754ENST00000384027ENSG00000213122ENST00000438548ENSG00000220113ENST00000401524ENSG00000220557ENST00000406019ENSG00000221500ENST00000408573ENSG00000223542ENST00000412954ENSG00000231023ENST00000434443ENST00000457339ENSG00000238059ENST00000438283ENSG00000279960ENST00000623494
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00014O_0001ENSDARG00000012397ENSDART00000126920ENSDART00000133002ENSDART00000143425ENSDARG00000036875ENSDART00000053542ENSDART00000138350ENSDARG00000036876ENSDART00000053545ENSDART00000140519ENSDARG00000081654ENSDART00000118159CIL_00014O_0002ENSG00000112306ENST00000230050ENST00000484616ENSG00000112319ENST00000355167ENST00000355286ENST00000367895ENST00000430974ENST00000452339ENST00000525849ENST00000531861ENST00000531901ENSG00000200534ENST00000363664ENSG00000206754ENST00000384027ENSG00000213122ENST00000438548ENSG00000220113ENST00000401524ENSG00000220557ENST00000406019ENSG00000221500ENST00000408573ENSG00000223542ENST00000412954ENSG00000231023ENST00000434443ENST00000457339ENSG00000238059ENST00000438283ENSG00000279960ENST00000623494
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012397 ENSDART00000126920 N/A N/A N/A 0.471±0.36 N/A N/A 1.750±0.60 0.886±0.00 N/A N/A 5.684±0.00 N/A N/A N/A
ENSDART00000131352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133002 N/A N/A N/A N/A N/A N/A 1.874±0.42 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143425 N/A N/A N/A N/A N/A N/A 1.544±0.00 0.805±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000036875 ENSDART00000053542 N/A N/A N/A 2.074±0.17 N/A N/A 3.961±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138350 N/A N/A N/A 203.808±146.17 N/A N/A 1064.984±807.53 122.068±135.32 1291.270±0.00 N/A 1294.810±0.00 N/A N/A N/A
ENSDARG00000036876 ENSDART00000053545 N/A N/A N/A 0.646±0.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140519 N/A N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000081654 ENSDART00000118159 N/A N/A N/A N/A N/A N/A N/A N/A 5.775±0.00 N/A 25.663±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112306 ENST00000230050 626.524±0.00 787.755±0.00 22.782±0.00 193.937±114.10 319.259±200.06 464.254±322.83 134.969±95.19 273.486±159.67 266.522±118.76 618.116±510.14 274.645±192.54 2269.877±1464.02 1358.970±133.12 639.977±67.23
ENST00000484616 N/A N/A 8.005±0.00 N/A N/A N/A N/A N/A 15.107±0.00 N/A 11.953±0.00 43.421±0.00 N/A N/A
ENSG00000112319 ENST00000355167 N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A 0.525±0.00 N/A N/A N/A N/A 0.764±0.00
ENST00000355286 N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367895 N/A N/A 1.712±0.00 N/A N/A N/A 1.867±0.00 N/A N/A N/A 4.860±0.00 N/A N/A 0.516±0.00
ENST00000421413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430974 N/A N/A N/A 0.295±0.00 N/A N/A 2.280±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000431403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452339 N/A 0.143±0.00 N/A 0.305±0.00 N/A N/A N/A N/A 1.686±0.00 N/A N/A N/A N/A N/A
ENST00000497350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525849 N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A
ENST00000531861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.742±0.00 N/A N/A N/A
ENST00000531901 N/A N/A N/A 0.264±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200534 ENST00000363664 0.625±0.00 7.374±0.00 N/A 1.730±0.00 1.737±0.00 21.465±19.80 0.809±0.00 0.598±0.00 1.841±0.00 26.331±14.89 12.184±0.00 8.717±3.71 N/A 1.443±0.00
ENSG00000206754 ENST00000384027 N/A 2.749±0.00 N/A N/A N/A 0.709±0.00 N/A N/A 0.691±0.00 2.088±0.00 N/A 7.697±0.00 N/A N/A
ENSG00000213122 ENST00000438548 N/A N/A N/A 0.037±0.00 N/A 0.068±0.00 N/A N/A N/A 0.035±0.00 0.031±0.00 0.057±0.00 N/A 0.031±0.00
ENSG00000220113 ENST00000401524 0.320±0.00 0.156±0.00 N/A 0.089±0.00 0.081±0.00 0.314±0.00 0.372±0.00 0.240±0.00 0.190±0.00 N/A N/A 0.815±0.00 N/A 0.072±0.00
ENSG00000220557 ENST00000406019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A
ENSG00000221500 ENST00000408573 2.234±0.00 13.673±0.00 N/A 0.471±0.00 5.556±0.00 N/A 1.589±0.00 1.764±0.00 N/A 5.724±0.00 N/A N/A N/A 0.814±0.00
ENSG00000223542 ENST00000412954 N/A N/A N/A N/A 0.023±0.00 0.128±0.00 0.042±0.00 0.023±0.00 0.176±0.00 0.235±0.03 N/A 0.678±0.00 0.048±0.00 0.048±0.00
ENSG00000231023 ENST00000434443 N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A 0.049±0.00 N/A N/A N/A 3.456±2.14
ENST00000457339 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A 0.030±0.01 N/A 0.542±0.00
ENSG00000238059 ENST00000438283 N/A N/A 0.331±0.00 N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 0.407±0.14 N/A 0.153±0.06
ENSG00000279960 ENST00000623494 0.077±0.00 0.153±0.00 0.030±0.00 0.243±0.00 0.108±0.00 0.084±0.00 0.051±0.02 0.086±0.01 0.018±0.00 0.123±0.00 0.109±0.00 0.067±0.00 N/A 0.037±0.01

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