C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00016Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000053262-ENSDARG00000014914 CGP 7955 14:34433280-34456576
GeneTranscriptPositionBiotype
ENSDARG00000014914 (lamp2)
lysosomal membrane glycoprotein 2 		ENSDART00000124242 (lamp2-001) 34449655-34456576 protein_coding
ENSDART00000132813 (lamp2-002) 34449072-34453949 protein_coding
ENSDART00000136441 (lamp2-006) 34450806-34452718 processed_transcript
ENSDART00000140001 (lamp2-005) 34453600-34456497 protein_coding
ENSDART00000142162 (lamp2-003) 34448790-34452973 processed_transcript
ENSDART00000147059 (lamp2-004) 34449219-34456414 protein_coding
ENSDARG00000053262 (atp1b4)
ATPase, (Na+)/K+ transporting, beta 4 polypeptide 		ENSDART00000075278 (atp1b4-001) 34433280-34444939 protein_coding
ENSDART00000147762 (atp1b4-003) 34433287-34443445 processed_transcript
CIL_00016Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101892-ENSG00000005893 CGP 9606 X:120362085-120469365
GeneTranscriptPositionBiotype
ENSG00000005893 (LAMP2)
lysosomal-associated membrane protein 2 		ENST00000200639 (LAMP2-001) 120430826-120469306 protein_coding
ENST00000371335 (LAMP2-002) 120436494-120469306 protein_coding
ENST00000434600 (LAMP2-004) 120427827-120469365 protein_coding
ENST00000486593 (LAMP2-003) 120431248-120449068 nonsense_mediated_decay
ENSG00000101892 (ATP1B4)
ATPase, Na+/K+ transporting, beta 4 polypeptide 		ENST00000218008 (ATP1B4-001) 120362112-120382371 protein_coding
ENST00000361319 (ATP1B4-002) 120362112-120382371 protein_coding
ENST00000539306 (ATP1B4-201) 120362085-120383249 protein_coding
CIL_00016Y_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016327-ENSMUSG00000016534 CGP 10090 X:38316184-38456454
GeneTranscriptPositionBiotype
ENSMUSG00000016327 (Atp1b4)
ATPase, (Na+)/K+ transporting, beta 4 polypeptide 		ENSMUST00000016471 (Atp1b4-001) 38316184-38336769 protein_coding
ENSMUST00000115134 (Atp1b4-002) 38316184-38336769 protein_coding
ENSMUSG00000016534 (Lamp2)
lysosomal-associated membrane protein 2 		ENSMUST00000016678 (Lamp2-001) 38405062-38456454 protein_coding
ENSMUST00000061755 (Lamp2-002) 38419507-38456454 protein_coding
ENSMUST00000074913 (Lamp2-003) 38401357-38456454 protein_coding
ENSMUST00000136817 (Lamp2-004) 38429882-38443150 retained_intron
ENSMUST00000144663 (Lamp2-005) 38452890-38456414 processed_transcript
ENSMUSG00000081473 (Gm4853)
predicted pseudogene 4853 		ENSMUST00000119359 (Gm4853-001) 38396935-38397328 processed_pseudogene
ENSMUSG00000082497 (Gm40)
predicted pseudogene 40 		ENSMUST00000122131 (Gm40-001) 38375287-38376974 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016Y_0001ENSDARG00000014914ENSDART00000124242ENSDART00000132813ENSDART00000136441ENSDART00000140001ENSDART00000142162ENSDART00000147059ENSDARG00000053262ENSDART00000075278ENSDART00000147762CIL_00016Y_0002ENSG00000005893ENST00000200639ENST00000371335ENST00000434600ENST00000486593ENSG00000101892ENST00000218008ENST00000361319ENST00000539306CIL_00016Y_0003ENSMUSG00000016327ENSMUST00000016471ENSMUST00000115134ENSMUSG00000016534ENSMUST00000016678ENSMUST00000061755ENSMUST00000074913ENSMUST00000136817ENSMUST00000144663ENSMUSG00000081473ENSMUST00000119359ENSMUSG00000082497ENSMUST00000122131
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016Y_0001ENSDARG00000014914ENSDART00000124242ENSDART00000140001ENSDART00000147059ENSDARG00000053262ENSDART00000075278CIL_00016Y_0002ENSG00000005893ENST00000200639ENST00000371335ENST00000434600ENST00000486593ENSG00000101892ENST00000218008ENST00000361319ENST00000539306CIL_00016Y_0003ENSMUSG00000016327ENSMUST00000016471ENSMUST00000115134ENSMUSG00000016534ENSMUST00000016678ENSMUST00000061755ENSMUSG00000081473ENSMUST00000119359ENSMUSG00000082497ENSMUST00000122131
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014914 ENSDART00000124242 N/A N/A N/A 21.017±10.01 N/A N/A 38.511±18.63 60.549±15.46 8.935±0.00 N/A 17.437±0.00 N/A N/A N/A
ENSDART00000132813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140001 N/A N/A N/A N/A N/A N/A 61.114±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147059 N/A N/A N/A N/A N/A N/A 24.739±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000053262 ENSDART00000075278 N/A N/A N/A 75.211±35.48 N/A N/A 0.470±0.27 0.931±0.00 0.093±0.00 N/A 8.649±0.00 N/A N/A N/A
ENSDART00000147762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005893 ENST00000200639 13.241±0.00 10.886±0.00 10.995±0.00 9.009±0.00 8.784±3.59 9.160±4.62 3.548±1.90 24.832±0.79 16.428±10.61 15.647±0.25 3.047±0.00 15.720±1.57 15.438±7.71 N/A
ENST00000371335 18.293±0.00 11.917±0.00 2.949±0.00 43.611±33.58 13.147±6.14 8.894±4.72 5.853±3.44 11.937±6.98 8.129±3.07 12.373±4.31 19.152±13.89 13.216±1.88 8.491±0.99 9.160±5.09
ENST00000434600 N/A N/A 5.505±0.00 10.851±0.00 3.639±0.00 3.944±0.00 1.915±0.00 4.582±0.00 N/A N/A 2.274±0.00 N/A N/A N/A
ENST00000486593 N/A N/A 13.621±0.00 N/A N/A N/A N/A N/A N/A N/A 8.213±0.00 13.975±0.00 N/A N/A
ENSG00000101892 ENST00000218008 0.006±0.00 N/A N/A 0.008±0.00 N/A 0.004±0.00 0.006±0.00 0.006±0.00 0.017±0.01 0.008±0.00 N/A 0.003±0.00 0.003±0.00 0.004±0.00
ENST00000361319 0.009±0.00 N/A N/A 0.009±0.00 N/A 0.031±0.00 0.006±0.00 0.036±0.00 0.030±0.00 0.009±0.00 0.519±0.00 0.004±0.00 0.003±0.00 0.068±0.03
ENST00000539306 N/A 0.056±0.00 N/A 0.026±0.00 N/A N/A 0.053±0.00 N/A N/A N/A 0.702±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016327 ENSMUST00000016471 0.004±0.00 N/A 0.001±0.00 0.004±0.00 N/A N/A 0.008±0.00 0.010±0.00 0.026±0.03 N/A 0.308±0.00 0.008±0.00 0.003±0.00 N/A
ENSMUST00000115134 0.005±0.00 0.057±0.02 0.001±0.00 0.007±0.00 0.292±0.11 N/A 0.008±0.00 0.046±0.02 0.038±0.05 0.107±0.01 0.748±0.24 0.025±0.03 0.008±0.00 N/A
ENSMUSG00000016534 ENSMUST00000016678 22.670±4.16 17.989±8.24 27.031±1.90 N/A 21.739±3.91 16.488±2.74 8.673±0.22 148.818±20.05 66.766±49.08 22.260±5.99 6.563±0.70 18.978±15.71 43.372±24.52 14.100±6.30
ENSMUST00000061755 54.097±16.39 21.402±5.13 54.422±0.03 10.416±5.33 38.970±3.29 15.824±4.08 30.387±4.89 61.400±8.28 50.840±27.66 55.931±1.97 12.599±1.10 39.044±8.14 31.168±17.47 6.253±2.87
ENSMUST00000074913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081473 ENSMUST00000119359 0.311±0.00 N/A 0.053±0.02 0.398±0.26 0.878±0.00 N/A 0.184±0.06 0.157±0.01 0.098±0.09 0.348±0.00 0.227±0.14 0.391±0.23 0.117±0.06 0.155±0.00
ENSMUSG00000082497 ENSMUST00000122131 N/A 0.183±0.07 0.043±0.00 N/A N/A N/A N/A 0.063±0.00 N/A N/A 0.109±0.00 0.271±0.00 N/A 1.763±0.67

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