C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000175_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036316-ENSDARG00000000489 CGP 7955 14:34306764-34326116
GeneTranscriptPositionBiotype
ENSDARG00000000489 (upf3b)
UPF3 regulator of nonsense transcripts homolog B (yeast) 		ENSDART00000010019 (upf3b-001) 34314308-34326116 protein_coding
ENSDART00000133248 (upf3b-002) 34315124-34319959 processed_transcript
ENSDARG00000036316 (rpl39)
ribosomal protein L39 		ENSDART00000052761 (rpl39-001) 34306765-34309051 protein_coding
ENSDART00000146274 (rpl39-002) 34306764-34308937 retained_intron
ENSDART00000146999 (rpl39-003) 34308032-34309011 retained_intron
CIL_000175_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198918-ENSG00000125351 CGP 9606 X:119786504-119852998
GeneTranscriptPositionBiotype
ENSG00000125351 (UPF3B)
UPF3 regulator of nonsense transcripts homolog B (yeast) 		ENST00000276201 (UPF3B-001) 119834022-119852998 protein_coding
ENST00000345865 (UPF3B-002) 119834026-119852998 protein_coding
ENST00000478840 (UPF3B-003) 119838266-119845254 processed_transcript
ENST00000619445 (UPF3B-201) 119834482-119852971 protein_coding
ENSG00000198918 (RPL39)
ribosomal protein L39 		ENST00000361575 (RPL39-001) 119786506-119791643 protein_coding
ENST00000468844 (RPL39-002) 119786506-119791595 processed_transcript
ENST00000477403 (RPL39-004) 119786504-119787456 processed_transcript
ENSG00000273811 (AC005052.1)
 ENST00000611483 (AC005052.1-201) 119810257-119810359 miRNA
ENSG00000276354 (RP3-327A19.7)
 ENST00000612866 (RP3-327A19.7-001) 119831616-119831759 unprocessed_pseudogene
ENSG00000277555 (CTA-38K21.5)
 ENST00000611760 (CTA-38K21.5-001) 119807433-119807581 unprocessed_pseudogene
ENSG00000278244 (CTA-38K21.3)
 ENST00000615015 (CTA-38K21.3-001) 119815164-119815307 unprocessed_pseudogene
ENSG00000278504 (CTA-38K21.4)
 ENST00000619131 (CTA-38K21.4-001) 119822906-119823043 unprocessed_pseudogene
CIL_000175_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079641-ENSMUSG00000036572 CGP 10090 X:37082520-37110322
GeneTranscriptPositionBiotype
ENSMUSG00000036572 (Upf3b)
UPF3 regulator of nonsense transcripts homolog B (yeast) 		ENSMUST00000076265 (Upf3b-001) 37091678-37110322 protein_coding
ENSMUST00000130324 (Upf3b-003) 37095676-37104523 protein_coding
ENSMUST00000133481 (Upf3b-002) 37097450-37110322 processed_transcript
ENSMUSG00000065642 (Snora69)
small nucleolar RNA, H/ACA box 69 		ENSMUST00000083708 (Snora69-201) 37082912-37083042 snoRNA
ENSMUSG00000079641 (Rpl39)
ribosomal protein L39 		ENSMUST00000115231 (Rpl39-001) 37082520-37085402 protein_coding
ENSMUST00000131149 (Rpl39-003) 37084537-37085156 retained_intron
ENSMUST00000138799 (Rpl39-002) 37083643-37085166 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000175_0001ENSDARG00000000489ENSDART00000010019ENSDART00000133248ENSDARG00000036316ENSDART00000052761ENSDART00000146274ENSDART00000146999CIL_000175_0002ENSG00000125351ENST00000276201ENST00000345865ENST00000478840ENST00000619445ENSG00000198918ENST00000361575ENST00000468844ENST00000477403ENSG00000273811ENST00000611483ENSG00000276354ENST00000612866ENSG00000277555ENST00000611760ENSG00000278244ENST00000615015ENSG00000278504ENST00000619131CIL_000175_0003ENSMUSG00000036572ENSMUST00000076265ENSMUST00000130324ENSMUST00000133481ENSMUSG00000065642ENSMUST00000083708ENSMUSG00000079641ENSMUST00000115231ENSMUST00000131149ENSMUST00000138799
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000175_0001ENSDARG00000000489ENSDART00000010019ENSDARG00000036316ENSDART00000052761ENSDART00000146274ENSDART00000146999CIL_000175_0002ENSG00000125351ENST00000276201ENST00000345865ENST00000619445ENSG00000198918ENST00000361575ENSG00000273811ENST00000611483ENSG00000276354ENST00000612866ENSG00000277555ENST00000611760ENSG00000278244ENST00000615015ENSG00000278504ENST00000619131CIL_000175_0003ENSMUSG00000036572ENSMUST00000076265ENSMUST00000130324ENSMUST00000133481ENSMUSG00000065642ENSMUST00000083708ENSMUSG00000079641ENSMUST00000115231
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000489 ENSDART00000010019 N/A N/A N/A 10.604±4.86 N/A N/A 13.984±8.95 9.535±11.64 0.528±0.00 N/A 3.984±0.00 N/A N/A N/A
ENSDART00000133248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000036316 ENSDART00000052761 N/A N/A N/A 128.282±146.80 N/A N/A 1136.860±435.93 374.612±346.80 635.923±0.00 N/A 803.574±0.00 N/A N/A N/A
ENSDART00000146274 N/A N/A N/A 3.322±2.77 N/A N/A 41.488±0.00 59.276±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000146999 N/A N/A N/A 0.287±0.06 N/A N/A 0.884±0.00 2.195±0.44 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125351 ENST00000276201 2.005±0.00 0.964±0.00 N/A 0.379±0.30 N/A N/A N/A N/A 0.088±0.00 0.429±0.00 0.146±0.00 2.494±3.07 0.943±0.67 1.346±0.00
ENST00000345865 2.749±0.00 4.132±0.00 0.164±0.00 4.412±0.00 1.783±1.59 5.124±0.00 1.700±0.00 3.793±0.00 2.236±0.00 3.153±0.00 2.730±0.00 2.695±1.26 1.835±1.25 10.178±3.24
ENST00000478840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619445 N/A N/A 0.090±0.00 0.271±0.00 0.109±0.00 0.962±0.00 0.141±0.00 0.221±0.00 0.245±0.00 N/A N/A 0.168±0.00 N/A N/A
ENSG00000198918 ENST00000361575 545.105±0.00 945.109±0.00 55.116±0.00 87.263±8.67 289.331±95.56 361.758±177.77 172.187±101.12 164.850±10.13 312.156±134.04 509.922±361.91 348.703±184.13 981.414±670.53 853.658±402.22 196.280±94.19
ENST00000468844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273811 ENST00000611483 N/A N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000276354 ENST00000612866 0.545±0.00 N/A N/A 0.346±0.00 0.447±0.00 N/A 0.102±0.00 0.438±0.00 0.551±0.00 0.889±0.00 N/A 5.800±5.18 2.069±1.08 14.146±10.83
ENSG00000277555 ENST00000611760 N/A N/A N/A 0.311±0.00 N/A N/A 0.134±0.00 N/A N/A N/A N/A 2.437±0.00 N/A 5.526±3.89
ENSG00000278244 ENST00000615015 0.879±0.00 1.297±0.00 N/A 0.672±0.00 0.658±0.00 N/A 0.282±0.00 25.573±0.00 N/A N/A N/A 0.916±0.00 N/A 9.171±6.47
ENSG00000278504 ENST00000619131 N/A N/A N/A N/A N/A 0.333±0.00 N/A 0.724±0.00 N/A N/A N/A 6.682±0.00 1.073±0.00 18.162±14.56
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036572 ENSMUST00000076265 0.537±0.08 0.986±0.32 5.608±0.09 13.618±5.87 1.522±0.34 1.357±0.57 1.218±0.19 1.056±0.61 5.713±3.56 2.012±0.36 3.943±0.87 4.935±6.46 6.448±4.11 7.408±10.22
ENSMUST00000130324 N/A N/A N/A 12.248±0.00 N/A N/A N/A N/A N/A N/A N/A 32.474±0.00 10.624±2.67 49.084±0.00
ENSMUST00000133481 1.267±0.63 1.081±0.31 N/A N/A 1.499±0.33 1.571±0.57 0.539±0.06 0.930±0.31 1.212±0.75 2.552±0.20 N/A 2.085±0.61 0.770±0.07 1.452±0.24
ENSMUSG00000065642 ENSMUST00000083708 N/A N/A 12.244±0.00 13.312±0.00 N/A N/A N/A N/A 45.698±0.36 N/A N/A 13.019±1.66 9.519±4.06 N/A
ENSMUSG00000079641 ENSMUST00000115231 40.745±11.41 3.014±0.60 448.639±25.16 117.111±43.21 44.162±28.12 30.694±12.89 26.878±1.90 43.595±10.73 230.220±231.42 28.361±1.74 152.166±15.06 127.236±231.27 318.293±113.76 7.642±2.50
ENSMUST00000131149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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