C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00017M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175879-ENSG00000128652 CGP 9606 2:176129694-176173102
GeneTranscriptPositionBiotype
ENSG00000128652 (HOXD3)
homeobox D3 		ENST00000249440 (HOXD3-001) 176164077-176173102 protein_coding
ENST00000410016 (HOXD3-004) 176160891-176173085 protein_coding
ENST00000432796 (HOXD3-002) 176136957-176169415 protein_coding
ENST00000459979 (HOXD3-003) 176136612-176139663 processed_transcript
ENSG00000170166 (HOXD4)
homeobox D4 		ENST00000306324 (HOXD4-001) 176151222-176153226 protein_coding
ENSG00000175879 (HOXD8)
homeobox D8 		ENST00000313173 (HOXD8-001) 176129740-176132029 protein_coding
ENST00000429017 (HOXD8-002) 176129694-176132695 protein_coding
ENST00000450510 (HOXD8-003) 176130357-176132000 protein_coding
ENST00000544999 (HOXD8-004) 176130022-176132100 protein_coding
ENSG00000237380 (HOXD-AS2)
HOXD cluster antisense RNA 2 		ENST00000426965 (HOXD-AS2-002) 176134606-176137098 antisense
ENST00000440016 (HOXD-AS2-001) 176121611-176137013 antisense
ENSG00000272729 (RP11-387A1.5)
 ENST00000608941 (RP11-387A1.5-001) 176164164-176165716 antisense
ENSG00000278500 (HOXD3)
 ENST00000468418 (HOXD3-001) 176151085-176173097 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_00017M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027102-ENSMUSG00000079277 CGP 10090 2:74704615-74748442
GeneTranscriptPositionBiotype
ENSMUSG00000027102 (Hoxd8)
homeobox D8 		ENSMUST00000019749 (Hoxd8-001) 74704905-74707933 protein_coding
ENSMUST00000074721 (Hoxd8-002) 74705152-74707307 protein_coding
ENSMUST00000151380 (Hoxd8-003) 74704615-74706812 protein_coding
ENSMUSG00000052371 (Hoxd3os1)
homeobox D3, opposite strand 1 		ENSMUST00000132326 (Hoxd3os1-004) 74703248-74712054 antisense
ENSMUST00000139005 (Hoxd3os1-002) 74713126-74716130 antisense
ENSMUST00000145799 (Hoxd3os1-001) 74710193-74715996 antisense
ENSMUST00000156342 (Hoxd3os1-003) 74710043-74712526 antisense
ENSMUSG00000065500 (Mir10b)
microRNA 10b 		ENSMUST00000083566 (Mir10b-201) 74726064-74726143 miRNA
ENSMUSG00000079277 (Hoxd3)
homeobox D3 		ENSMUST00000047830 (Hoxd3-005) 74739619-74747900 protein_coding
ENSMUST00000111982 (Hoxd3-004) 74736515-74747915 protein_coding
ENSMUST00000111983 (Hoxd3-001) 74711927-74748271 protein_coding
ENSMUST00000140666 (Hoxd3-007) 74745674-74746596 protein_coding
ENSMUST00000144544 (Hoxd3-006) 74732913-74744214 protein_coding
ENSMUST00000190553 (Hoxd3-008) 74745722-74748442 retained_intron
ENSMUSG00000100642 (HOXD3)
predicted gene 28230 		ENSMUST00000053932 (HOXD3-001) 74726728-74747918 nonsense_mediated_decay
ENSMUSG00000101174 (Hoxd4)
homeobox D4 		ENSMUST00000047904 (Hoxd4-201) 74721978-74729160 protein_coding
ENSMUST00000111980 (Hoxd4-001) 74727074-74729123 protein_coding
ENSMUST00000144040 (Hoxd4-002) 74711929-74728868 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017M_0001ENSG00000128652ENST00000249440ENST00000410016ENST00000432796ENST00000459979ENSG00000170166ENST00000306324ENSG00000175879ENST00000313173ENST00000429017ENST00000450510ENST00000544999ENSG00000237380ENST00000426965ENST00000440016ENSG00000272729ENST00000608941ENSG00000278500ENST00000468418CIL_00017M_0002ENSMUSG00000027102ENSMUST00000019749ENSMUST00000074721ENSMUST00000151380ENSMUSG00000052371ENSMUST00000132326ENSMUST00000139005ENSMUST00000145799ENSMUST00000156342ENSMUSG00000065500ENSMUST00000083566ENSMUSG00000079277ENSMUST00000047830ENSMUST00000111982ENSMUST00000111983ENSMUST00000140666ENSMUST00000144544ENSMUST00000190553ENSMUSG00000100642ENSMUST00000053932ENSMUSG00000101174ENSMUST00000047904ENSMUST00000111980ENSMUST00000144040
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017M_0001ENSG00000128652ENST00000249440ENST00000410016ENST00000432796ENST00000459979ENSG00000170166ENST00000306324ENSG00000175879ENST00000313173ENST00000429017ENST00000450510ENST00000544999ENSG00000237380ENST00000426965ENST00000440016ENSG00000272729ENST00000608941ENSG00000278500ENST00000468418CIL_00017M_0002ENSMUSG00000027102ENSMUST00000019749ENSMUST00000074721ENSMUST00000151380ENSMUSG00000052371ENSMUST00000132326ENSMUST00000139005ENSMUST00000145799ENSMUST00000156342ENSMUSG00000065500ENSMUST00000083566ENSMUSG00000079277ENSMUST00000047830ENSMUST00000111982ENSMUST00000111983ENSMUST00000190553ENSMUSG00000100642ENSMUST00000053932ENSMUSG00000101174ENSMUST00000047904ENSMUST00000111980ENSMUST00000144040
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128652 ENST00000249440 0.691±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A 0.056±0.00 2.861±0.00
ENST00000410016 N/A N/A 1.032±0.00 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A
ENST00000432796 N/A N/A N/A N/A 2.177±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459979 1.590±0.00 N/A N/A N/A N/A 2.144±0.00 N/A N/A 0.464±0.00 0.295±0.00 0.423±0.24 0.837±0.00 0.288±0.11 N/A
ENSG00000170166 ENST00000306324 0.561±0.00 N/A 2.684±0.00 0.028±0.00 N/A 1.337±0.00 0.093±0.00 N/A 0.029±0.01 0.138±0.00 0.430±0.00 N/A 0.071±0.02 N/A
ENSG00000175879 ENST00000313173 N/A N/A N/A N/A 1.521±0.00 3.832±0.00 0.350±0.00 25.438±0.00 N/A 0.455±0.00 0.528±0.00 3.731±1.26 0.120±0.00 N/A
ENST00000429017 4.822±0.00 1.438±0.00 4.061±0.00 N/A 4.149±1.91 1.296±0.12 0.141±0.00 23.980±0.00 0.440±0.43 0.186±0.00 0.689±0.13 3.414±2.77 0.319±0.06 7.197±3.35
ENST00000450510 6.630±0.00 3.579±0.00 2.572±0.00 0.014±0.00 2.154±0.40 4.501±0.00 N/A N/A N/A 0.367±0.00 0.859±0.00 4.128±3.90 0.338±0.24 6.931±3.32
ENST00000544999 N/A N/A N/A N/A N/A 1.337±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237380 ENST00000426965 N/A N/A N/A N/A 0.956±0.00 0.977±0.00 N/A N/A N/A N/A 0.489±0.00 N/A 0.221±0.05 N/A
ENST00000440016 N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 0.080±0.00 0.212±0.00 N/A N/A N/A
ENSG00000272729 ENST00000608941 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A
ENSG00000278500 ENST00000468418 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027102 ENSMUST00000019749 11.876±4.32 11.254±2.56 9.910±0.73 0.369±0.00 3.611±1.33 1.718±1.05 0.111±0.00 18.730±6.42 0.028±0.01 0.222±0.00 7.149±3.20 12.048±4.35 0.923±0.60 13.437±0.69
ENSMUST00000074721 1.736±0.60 9.791±6.83 2.441±0.23 0.021±0.00 1.056±0.00 1.791±0.50 0.093±0.00 N/A 0.020±0.00 N/A 3.928±1.21 5.266±2.69 0.545±0.19 3.054±0.50
ENSMUST00000151380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.811±0.00 1.381±0.66 11.715±0.00
ENSMUSG00000052371 ENSMUST00000132326 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.04 N/A 3.162±1.20 N/A N/A N/A
ENSMUST00000139005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.933±14.70
ENSMUST00000145799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.780±4.06
ENSMUST00000156342 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.266±0.00 1.705±0.33 N/A N/A N/A
ENSMUSG00000065500 ENSMUST00000083566 N/A N/A N/A N/A N/A N/A N/A 15348.100±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000079277 ENSMUST00000047830 N/A N/A N/A 8.867±0.00 N/A N/A N/A N/A 0.037±0.03 0.079±0.00 N/A N/A N/A N/A
ENSMUST00000111982 N/A N/A N/A 2.899±1.54 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000111983 6.094±0.80 3.163±0.67 N/A N/A N/A 1.120±0.01 N/A 3.670±1.58 0.005±0.00 N/A N/A 9.212±3.36 N/A N/A
ENSMUST00000140666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190553 N/A N/A N/A 5.326±2.83 N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000100642 ENSMUST00000053932 4.022±1.86 3.482±0.26 6.860±0.33 N/A 1.570±0.48 1.064±0.33 0.078±0.02 4.344±0.88 0.013±0.01 0.095±0.02 0.212±0.06 5.706±1.66 0.612±0.17 N/A
ENSMUSG00000101174 ENSMUST00000047904 N/A N/A N/A N/A 0.943±0.00 N/A 0.060±0.00 N/A 0.011±0.00 N/A 0.336±0.06 N/A 0.550±0.00 N/A
ENSMUST00000111980 14.007±4.52 27.462±9.08 16.854±0.00 N/A 3.281±1.22 5.002±1.12 0.159±0.06 8.861±3.41 0.063±0.04 0.222±0.12 0.536±0.19 25.282±8.47 0.857±0.13 N/A
ENSMUST00000144040 10.549±2.31 16.777±6.87 N/A N/A 3.483±0.68 2.956±0.34 N/A 7.880±1.73 0.022±0.00 0.341±0.00 0.561±0.05 9.059±0.00 N/A N/A

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