C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00017O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128710-ENSG00000128709 CGP 9606 2:176108790-176124937
GeneTranscriptPositionBiotype
ENSG00000128709 (HOXD9)
homeobox D9 		ENST00000249499 (HOXD9-001) 176122720-176124937 protein_coding
ENST00000613849 (HOXD9-201) 176122763-176124244 protein_coding
ENSG00000128710 (HOXD10)
homeobox D10 		ENST00000249501 (HOXD10-001) 176116579-176119942 protein_coding
ENST00000490088 (HOXD10-002) 176108790-176119394 processed_transcript
ENST00000549469 (HOXD10-003) 176108877-176119243 processed_transcript
ENSG00000128713 (HOXD11)
homeobox D11 		ENST00000249504 (HOXD11-001) 176107286-176109588 protein_coding
ENST00000498438 (HOXD11-003) 176104216-176109754 processed_transcript
ENST00000619244 (HOXD11-201) 176107356-176109243 protein_coding
ENSG00000237380 (HOXD-AS2)
HOXD cluster antisense RNA 2 		ENST00000426965 (HOXD-AS2-002) 176134606-176137098 antisense
ENST00000440016 (HOXD-AS2-001) 176121611-176137013 antisense
CIL_00017O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050368-ENSMUSG00000043342 CGP 10090 2:74691924-74700208
GeneTranscriptPositionBiotype
ENSMUSG00000043342 (Hoxd9)
homeobox D9 		ENSMUST00000059272 (Hoxd9-001) 74697727-74700208 protein_coding
ENSMUSG00000050368 (Hoxd10)
homeobox D10 		ENSMUST00000061745 (Hoxd10-001) 74691924-74695105 protein_coding
ENSMUSG00000086077 (Gm14396)
predicted gene 14396 		ENSMUST00000126966 (Gm14396-001) 74695520-74697365 lincRNA
ENSMUST00000152027 (Gm14396-002) 74695601-74697365 lincRNA
ENSMUSG00000099521 (RP23-313J15.17)
predicted gene 28309 		ENSMUST00000136302 (RP23-313J15.17-001) 74683446-74694194 processed_transcript
ENSMUSG00000100209 (RP23-313J15.16)
predicted gene 28793 		ENSMUST00000190845 (RP23-313J15.16-001) 74696768-74697586 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017O_0001ENSG00000128709ENST00000249499ENST00000613849ENSG00000128710ENST00000249501ENST00000490088ENST00000549469ENSG00000128713ENST00000249504ENST00000498438ENST00000619244ENSG00000237380ENST00000426965ENST00000440016CIL_00017O_0002ENSMUSG00000043342ENSMUST00000059272ENSMUSG00000050368ENSMUST00000061745ENSMUSG00000086077ENSMUST00000126966ENSMUST00000152027ENSMUSG00000099521ENSMUST00000136302ENSMUSG00000100209ENSMUST00000190845
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017O_0001ENSG00000128709ENST00000249499ENST00000613849ENSG00000128710ENST00000249501ENST00000490088ENST00000549469ENSG00000128713ENST00000249504ENST00000498438ENST00000619244ENSG00000237380ENST00000426965ENST00000440016CIL_00017O_0002ENSMUSG00000043342ENSMUST00000059272ENSMUSG00000050368ENSMUST00000061745ENSMUSG00000086077ENSMUST00000126966ENSMUST00000152027ENSMUSG00000099521ENSMUST00000136302ENSMUSG00000100209ENSMUST00000190845
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128709 ENST00000249499 8.720±0.00 8.508±0.00 1.871±0.00 N/A 5.134±4.78 7.380±0.00 0.078±0.06 19.216±0.00 0.102±0.07 0.423±0.00 0.401±0.16 8.951±4.00 1.150±0.31 12.395±3.02
ENST00000613849 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A 1.593±1.44 2.502±0.00 8.694±0.00
ENSG00000128710 ENST00000249501 0.301±0.00 0.979±0.00 2.790±0.00 N/A 1.649±1.53 0.889±0.19 N/A 2.062±2.03 0.555±0.00 0.033±0.00 N/A 0.628±0.37 0.325±0.17 1.875±0.57
ENST00000490088 N/A N/A N/A N/A N/A 1.061±0.00 N/A 0.036±0.00 N/A N/A N/A N/A 0.086±0.00 N/A
ENST00000549469 N/A N/A 2.852±0.00 N/A 0.197±0.00 N/A N/A N/A N/A 0.082±0.00 N/A 0.915±0.00 0.209±0.00 N/A
ENSG00000128713 ENST00000249504 N/A N/A N/A N/A N/A 1.966±0.00 N/A N/A N/A N/A N/A N/A 1.064±0.00 0.886±0.00
ENST00000498438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.681±0.00 0.640±0.00 N/A
ENST00000619244 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A 1.970±0.00 N/A N/A N/A N/A N/A
ENSG00000237380 ENST00000426965 N/A N/A N/A N/A 0.956±0.00 0.977±0.00 N/A N/A N/A N/A 0.489±0.00 N/A 0.221±0.05 N/A
ENST00000440016 N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 0.080±0.00 0.212±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043342 ENSMUST00000059272 15.533±11.58 2.288±1.22 5.904±0.42 0.078±0.05 2.757±0.56 0.916±0.37 0.064±0.02 11.192±3.77 0.012±0.01 0.220±0.07 9.038±1.15 12.575±6.87 1.799±0.89 0.824±0.27
ENSMUSG00000050368 ENSMUST00000061745 7.320±9.60 N/A 8.354±3.47 0.032±0.02 0.322±0.24 N/A 0.036±0.00 3.845±0.73 0.029±0.01 0.050±0.00 2.079±0.35 2.884±0.76 0.702±0.27 0.442±0.15
ENSMUSG00000086077 ENSMUST00000126966 2.886±0.00 0.111±0.00 N/A N/A 0.259±0.18 0.404±0.14 N/A 0.177±0.00 N/A N/A N/A 0.570±0.32 0.078±0.03 0.146±0.07
ENSMUST00000152027 3.413±0.00 N/A 0.122±0.04 N/A 0.208±0.00 0.244±0.09 N/A 0.333±0.18 0.029±0.00 N/A N/A 0.509±0.18 0.590±0.00 0.178±0.00
ENSMUSG00000099521 ENSMUST00000136302 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.742±0.00 N/A
ENSMUSG00000100209 ENSMUST00000190845 0.121±0.00 N/A 0.286±0.05 N/A 0.122±0.00 N/A N/A 0.258±0.01 N/A N/A 0.252±0.00 0.842±0.21 0.369±0.24 0.116±0.00

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