C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00017R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128645-ENSG00000128654 CGP 9606 2:176188579-176338025
GeneTranscriptPositionBiotype
ENSG00000128645 (HOXD1)
homeobox D1 		ENST00000331462 (HOXD1-001) 176188579-176190907 protein_coding
ENSG00000128654 (MTX2)
metaxin 2 		ENST00000249442 (MTX2-001) 176269419-176338025 protein_coding
ENST00000420864 (MTX2-002) 176269395-176338025 nonsense_mediated_decay
ENST00000423461 (MTX2-008) 176269452-176328322 nonsense_mediated_decay
ENST00000443241 (MTX2-004) 176269470-176337679 protein_coding
ENST00000452865 (MTX2-007) 176269502-176337630 protein_coding
ENSG00000218175 (AC016739.2)
 ENST00000405359 (AC016739.2-001) 176200908-176201252 processed_pseudogene
ENSG00000224189 (HAGLR)
HOXD antisense growth-associated long non-coding RNA 		ENST00000413969 (HAGLR-005) 176176456-176188958 antisense
ENST00000416928 (HAGLR-001) 176173195-176178284 antisense
ENST00000417086 (HAGLR-003) 176175994-176188540 antisense
ENST00000425005 (HAGLR-002) 176176480-176188479 antisense
ENST00000436126 (HAGLR-004) 176176186-176188269 antisense
ENST00000447538 (HAGLR-011) 176176380-176178084 antisense
ENST00000452365 (HAGLR-008) 176176524-176188531 antisense
ENST00000456876 (HAGLR-006) 176176472-176178125 antisense
ENST00000546798 (HAGLR-012) 176176386-176178125 antisense
ENST00000547207 (HAGLR-007) 176176159-176177568 antisense
ENST00000549329 (HAGLR-010) 176176386-176178042 antisense
ENST00000552156 (HAGLR-009) 176176472-176178083 antisense
ENSG00000230384 (AC016739.1)
 ENST00000412645 (AC016739.1-001) 176242111-176242993 processed_pseudogene
ENSG00000279160 (RP11-387A1.6)
 ENST00000623777 (RP11-387A1.6-001) 176189919-176192538 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00017R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042448-ENSMUSG00000027099 CGP 10090 2:74762980-74878431
GeneTranscriptPositionBiotype
ENSMUSG00000027099 (Mtx2)
metaxin 2 		ENSMUST00000028511 (Mtx2-001) 74825803-74878431 protein_coding
ENSMUST00000129284 (Mtx2-003) 74868981-74876504 retained_intron
ENSMUST00000155844 (Mtx2-002) 74825830-74868814 retained_intron
ENSMUSG00000042448 (Hoxd1)
homeobox D1 		ENSMUST00000047793 (Hoxd1-001) 74762980-74765142 protein_coding
ENSMUSG00000081156 (Gm14425)
predicted gene 14425 		ENSMUST00000121240 (Gm14425-001) 74855706-74856311 transcribed_processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017R_0001ENSG00000128645ENST00000331462ENSG00000128654ENST00000249442ENST00000420864ENST00000423461ENST00000443241ENST00000452865ENSG00000218175ENST00000405359ENSG00000224189ENST00000413969ENST00000416928ENST00000417086ENST00000425005ENST00000436126ENST00000447538ENST00000452365ENST00000456876ENST00000546798ENST00000547207ENST00000549329ENST00000552156ENSG00000230384ENST00000412645ENSG00000279160ENST00000623777CIL_00017R_0002ENSMUSG00000027099ENSMUST00000028511ENSMUST00000129284ENSMUST00000155844ENSMUSG00000042448ENSMUST00000047793ENSMUSG00000081156ENSMUST00000121240
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017R_0001ENSG00000128645ENST00000331462ENSG00000128654ENST00000249442ENST00000420864ENST00000443241ENST00000452865ENSG00000218175ENST00000405359ENSG00000224189ENST00000413969ENST00000416928ENST00000417086ENST00000447538ENST00000452365ENST00000456876ENST00000547207ENST00000552156ENSG00000230384ENST00000412645ENSG00000279160ENST00000623777CIL_00017R_0002ENSMUSG00000027099ENSMUST00000028511ENSMUST00000129284ENSMUST00000155844ENSMUSG00000042448ENSMUST00000047793ENSMUSG00000081156ENSMUST00000121240
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128645 ENST00000331462 N/A N/A N/A 0.622±0.00 N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A
ENSG00000128654 ENST00000249442 3.028±0.00 1.230±0.00 1.078±0.00 4.894±0.94 2.689±0.52 4.093±0.00 2.657±1.58 8.293±0.00 1.462±0.14 N/A 1.442±0.16 10.027±5.53 8.304±0.84 22.440±7.22
ENST00000420864 0.661±0.00 1.317±0.00 1.095±0.00 1.405±0.00 1.389±0.00 N/A 0.606±0.00 N/A N/A N/A N/A 2.557±1.59 N/A N/A
ENST00000423461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443241 4.943±0.00 9.817±0.00 2.073±0.00 12.885±1.21 6.974±3.41 7.888±0.00 10.577±7.77 13.212±10.33 4.409±1.53 6.423±0.00 6.331±1.75 15.487±12.18 11.424±2.50 36.939±13.55
ENST00000452865 N/A N/A N/A N/A N/A N/A 6.663±0.00 N/A 2.007±0.00 1.577±0.00 3.139±0.00 N/A N/A N/A
ENSG00000218175 ENST00000405359 0.173±0.00 0.562±0.00 N/A 0.138±0.00 0.397±0.00 0.538±0.00 0.224±0.00 0.193±0.00 0.168±0.00 1.058±0.00 1.193±0.88 0.897±0.81 0.433±0.23 0.455±0.00
ENSG00000224189 ENST00000413969 N/A N/A N/A N/A N/A N/A N/A N/A 1.133±0.00 N/A N/A N/A N/A N/A
ENST00000416928 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A 0.019±0.01 6.878±4.43
ENST00000417086 N/A N/A 1.208±0.00 N/A 0.721±0.00 2.069±0.00 N/A N/A N/A 2.660±0.00 N/A 1.341±0.00 N/A N/A
ENST00000425005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447538 N/A N/A N/A N/A N/A 4.708±0.00 N/A N/A N/A N/A N/A 3.107±0.00 N/A N/A
ENST00000452365 N/A N/A N/A N/A 0.468±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A N/A
ENST00000546798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A
ENST00000549329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552156 N/A N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000230384 ENST00000412645 0.071±0.00 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00
ENSG00000279160 ENST00000623777 0.718±0.00 N/A N/A 0.301±0.00 N/A 0.520±0.00 0.070±0.00 N/A 0.014±0.00 N/A 0.066±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027099 ENSMUST00000028511 4.135±1.07 N/A 3.216±0.63 3.281±1.01 2.954±0.64 2.966±0.85 3.790±1.60 3.462±0.48 3.223±1.50 1.359±0.00 3.142±0.63 4.527±1.21 3.751±1.02 2.071±0.77
ENSMUST00000129284 13.781±1.64 N/A 9.546±0.05 13.609±4.47 9.168±1.63 N/A 20.740±1.59 16.748±1.39 12.443±2.53 N/A 4.034±0.63 16.034±4.93 17.159±7.74 9.134±1.64
ENSMUST00000155844 34.800±19.23 217.135±34.10 10.934±0.00 N/A 50.690±14.69 73.859±13.44 29.465±15.54 40.059±12.95 21.428±11.52 36.312±16.89 N/A 70.639±45.96 5.766±0.06 9.755±9.13
ENSMUSG00000042448 ENSMUST00000047793 0.019±0.00 N/A 0.018±0.01 0.235±0.20 0.017±0.00 0.027±0.01 N/A 0.038±0.01 0.015±0.00 N/A N/A 0.041±0.02 0.049±0.03 0.018±0.00
ENSMUSG00000081156 ENSMUST00000121240 0.112±0.06 0.194±0.00 0.058±0.04 0.171±0.03 0.329±0.20 0.485±0.09 0.139±0.00 0.165±0.11 0.070±0.04 0.223±0.05 0.078±0.00 0.368±0.40 0.038±0.01 0.183±0.09

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