C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000196_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125637-ENSG00000125618 CGP 9606 2:113157325-113278950
GeneTranscriptPositionBiotype
ENSG00000125637 (PSD4)
pleckstrin and Sec7 domain containing 4 		ENST00000245796 (PSD4-001) 113173971-113203237 protein_coding
ENST00000409378 (PSD4-010) 113196280-113201330 protein_coding
ENST00000409656 (PSD4-004) 113185044-113201566 nonsense_mediated_decay
ENST00000418251 (PSD4-002) 113173980-113203225 retained_intron
ENST00000441564 (PSD4-003) 113173997-113209396 protein_coding
ENST00000460725 (PSD4-005) 113197195-113202912 retained_intron
ENST00000464559 (PSD4-006) 113198558-113202912 retained_intron
ENST00000465592 (PSD4-011) 113197342-113198830 retained_intron
ENST00000465917 (PSD4-012) 113157325-113183044 processed_transcript
ENST00000485525 (PSD4-007) 113173972-113185750 processed_transcript
ENST00000487574 (PSD4-009) 113196149-113198189 retained_intron
ENST00000493329 (PSD4-008) 113193848-113196607 retained_intron
ENSG00000189223 (PAX8-AS1)
PAX8 antisense RNA 1 		ENST00000333145 (PAX8-AS1-001) 113235540-113267004 antisense
ENST00000422956 (PAX8-AS1-002) 113235536-113276581 antisense
ENST00000431844 (PAX8-AS1-007) 113235540-113236357 antisense
ENST00000436293 (PAX8-AS1-006) 113236269-113267010 antisense
ENST00000437551 (PAX8-AS1-004) 113235527-113241410 antisense
ENST00000445745 (PAX8-AS1-005) 113236237-113267010 antisense
ENST00000451179 (PAX8-AS1-003) 113235530-113266170 antisense
ENST00000456685 (PAX8-AS1-008) 113211522-113239690 antisense
ENST00000510859 (PAX8-AS1-009) 113250766-113266973 antisense
ENST00000553869 (PAX8-AS1-013) 113235540-113263362 antisense
ENST00000555766 (PAX8-AS1-010) 113237534-113239908 retained_intron
ENST00000556070 (PAX8-AS1-012) 113235536-113265830 antisense
ENST00000609210 (PAX8-AS1-014) 113255390-113273699 antisense
ENST00000616073 (PAX8-AS1-011) 113235540-113265509 antisense
ENST00000617278 (PAX8-AS1-015) 113259148-113263409 retained_intron
ENST00000617509 (PAX8-AS1-016) 113235530-113259579 antisense
ENST00000623031 (PAX8-AS1-019) 113263362-113273164 antisense
ENST00000623306 (PAX8-AS1-018) 113235425-113263334 antisense
ENST00000624706 (PAX8-AS1-017) 113235545-113255534 antisense
ENSG00000274877 (RP11-65I12.1)
 ENST00000613966 (RP11-65I12.1-001) 113237595-113240825 antisense
CIL_000196_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026979-ENSMUSG00000026976 CGP 10090 2:24367580-24475599
GeneTranscriptPositionBiotype
ENSMUSG00000026976 (Pax8)
paired box 8 		ENSMUST00000028355 (Pax8-001) 24420560-24475599 protein_coding
ENSMUST00000133746 (Pax8-009) 24442998-24445900 processed_transcript
ENSMUST00000136228 (Pax8-004) 24429527-24475574 protein_coding
ENSMUST00000149294 (Pax8-003) 24421520-24475097 protein_coding
ENSMUST00000149860 (Pax8-007) 24421394-24423082 retained_intron
ENSMUST00000152614 (Pax8-002) 24471885-24475574 retained_intron
ENSMUST00000153535 (Pax8-008) 24441177-24475215 protein_coding
ENSMUST00000153601 (Pax8-005) 24421531-24475564 protein_coding
ENSMUSG00000026979 (Psd4)
pleckstrin and Sec7 domain containing 4 		ENSMUST00000056641 (Psd4-002) 24385332-24408729 protein_coding
ENSMUST00000102942 (Psd4-001) 24367610-24409182 protein_coding
ENSMUST00000127242 (Psd4-007) 24386569-24394591 processed_transcript
ENSMUST00000131930 (Psd4-006) 24385353-24394305 processed_transcript
ENSMUST00000132924 (Psd4-008) 24405629-24407007 processed_transcript
ENSMUST00000133730 (Psd4-005) 24385336-24397320 processed_transcript
ENSMUST00000140303 (Psd4-009) 24401036-24403252 processed_transcript
ENSMUST00000140547 (Psd4-003) 24367580-24394258 processed_transcript
ENSMUST00000142522 (Psd4-004) 24385335-24394411 processed_transcript
ENSMUST00000166388 (Psd4-201) 24386617-24408200 protein_coding
ENSMUSG00000085057 (Gm13415)
predicted gene 13415 		ENSMUST00000131886 (Gm13415-001) 24442835-24465389 antisense
ENSMUST00000135829 (Gm13415-002) 24440418-24486855 antisense
ENSMUST00000187034 (Gm13415-003) 24442849-24445264 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000196_0001ENSG00000125637ENST00000245796ENST00000409656ENST00000418251ENST00000441564ENST00000464559ENST00000465917ENSG00000189223ENST00000333145ENST00000422956ENST00000437551ENST00000445745ENST00000451179ENST00000510859ENST00000555766ENSG00000274877ENST00000613966CIL_000196_0002ENSMUSG00000026976ENSMUST00000028355ENSMUST00000149294ENSMUST00000149860ENSMUST00000153601ENSMUSG00000026979ENSMUST00000056641ENSMUST00000102942ENSMUST00000127242ENSMUST00000131930ENSMUST00000132924ENSMUST00000133730ENSMUST00000140303ENSMUST00000140547ENSMUST00000166388ENSMUSG00000085057ENSMUST00000131886ENSMUST00000187034
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125637 ENST00000245796 0.229±0.00 8.401±0.00 N/A 0.523±0.41 0.791±0.26 0.840±0.50 0.235±0.00 3.298±1.86 5.880±0.00 2.388±0.95 N/A 4.893±4.32 7.218±0.83 0.687±0.34
ENST00000409378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409656 0.442±0.00 N/A N/A 1.000±0.00 1.081±0.00 1.906±0.00 0.189±0.09 N/A 0.646±0.00 1.307±0.00 0.076±0.00 10.556±6.79 6.682±0.00 1.946±0.00
ENST00000418251 N/A 3.432±0.00 N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A N/A 1.249±0.00 N/A N/A
ENST00000441564 N/A N/A N/A N/A 0.255±0.00 N/A 0.044±0.02 N/A N/A N/A 0.025±0.01 1.290±0.82 0.909±0.00 N/A
ENST00000460725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464559 0.775±0.00 10.313±0.00 N/A N/A 2.476±0.00 1.336±0.00 0.337±0.00 5.133±0.00 11.787±0.00 3.605±0.00 0.214±0.00 8.886±5.92 8.813±1.28 1.959±0.48
ENST00000465592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465917 N/A N/A 1.789±0.00 N/A 2.040±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189223 ENST00000333145 1.773±0.00 N/A N/A 3.065±1.74 N/A 0.028±0.00 1.749±1.23 0.396±0.00 1.708±0.90 3.342±2.05 0.421±0.00 3.724±0.00 3.839±0.93 5.889±1.27
ENST00000422956 0.197±0.00 N/A N/A 0.265±0.16 0.030±0.00 0.384±0.00 N/A N/A 0.095±0.00 0.480±0.00 N/A 1.373±0.69 N/A N/A
ENST00000431844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437551 N/A 3.066±0.00 N/A N/A 0.318±0.00 N/A 1.720±0.00 N/A 1.757±0.00 3.625±0.00 0.511±0.00 12.250±6.65 4.264±1.39 4.553±0.00
ENST00000445745 N/A N/A N/A N/A 0.281±0.00 N/A N/A N/A N/A N/A N/A 3.760±0.00 4.269±0.00 N/A
ENST00000451179 N/A N/A N/A 1.559±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 7.069±0.00 16.532±0.00
ENST00000456685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510859 N/A N/A N/A N/A 2.405±0.00 2.516±0.00 N/A N/A N/A N/A N/A N/A 1.623±0.00 4.491±0.00
ENST00000553869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555766 N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274877 ENST00000613966 0.707±0.00 1.622±0.00 N/A N/A N/A 1.252±0.00 0.804±0.00 0.831±0.00 N/A 1.545±0.00 0.167±0.00 11.716±9.49 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026976 ENSMUST00000028355 4.739±3.33 N/A 0.014±0.00 0.629±0.71 0.029±0.00 0.229±0.00 N/A 23.219±2.04 0.019±0.01 N/A N/A 6.634±2.45 2.940±3.64 0.475±0.45
ENSMUST00000133746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149294 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.03 N/A N/A N/A N/A 0.051±0.00
ENSMUST00000149860 N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A
ENSMUST00000152614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153601 N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000026979 ENSMUST00000056641 0.756±0.63 0.305±0.12 3.380±0.02 0.063±0.04 5.588±2.09 6.172±0.84 0.129±0.03 0.314±0.11 2.573±1.48 2.127±0.59 0.217±0.22 1.430±0.32 6.893±3.65 0.085±0.03
ENSMUST00000102942 0.534±0.28 0.119±0.06 1.933±0.01 0.023±0.00 1.714±0.17 5.712±0.93 0.048±0.02 0.066±0.01 0.585±0.41 0.713±0.14 0.030±0.00 1.357±0.53 3.640±1.95 0.100±0.00
ENSMUST00000127242 N/A 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A
ENSMUST00000132924 N/A N/A N/A 2.163±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A
ENSMUST00000140303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.193±0.00
ENSMUST00000140547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.595±0.00 N/A N/A
ENSMUST00000142522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166388 0.342±0.14 0.117±0.02 1.234±0.00 0.062±0.00 3.117±1.60 3.469±0.00 0.235±0.09 0.411±0.07 0.699±0.56 1.197±0.71 0.133±0.13 1.032±0.34 5.170±3.45 0.157±0.09
ENSMUSG00000085057 ENSMUST00000131886 N/A N/A N/A N/A 0.022±0.01 0.318±0.07 N/A N/A 0.014±0.00 N/A N/A N/A 0.117±0.00 0.026±0.02
ENSMUST00000135829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187034 N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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