C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001B1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055739-ENSDARG00000055754 CGP 7955 23:28928158-28956874
GeneTranscriptPositionBiotype
ENSDARG00000055739 (ribc1)
RIB43A domain with coiled-coils 1 		ENSDART00000078141 (ribc1-001) 28928158-28935473 protein_coding
ENSDARG00000055754 (smc1a)
structural maintenance of chromosomes 1A 		ENSDART00000078148 (smc1a-001) 28936170-28956874 protein_coding
CIL_0001B1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025257-ENSMUSG00000041133 CGP 10090 X:152004582-152062694
GeneTranscriptPositionBiotype
ENSMUSG00000025257 (Ribc1)
RIB43A domain with coiled-coils 1 		ENSMUST00000026288 (Ribc1-001) 152004582-152016295 protein_coding
ENSMUST00000133517 (Ribc1-002) 152009584-152016270 processed_transcript
ENSMUSG00000041133 (Smc1a)
structural maintenance of chromosomes 1A 		ENSMUST00000045312 (Smc1a-001) 152016428-152062694 protein_coding
ENSMUST00000124681 (Smc1a-006) 152058467-152059508 retained_intron
ENSMUST00000131395 (Smc1a-004) 152046628-152047935 retained_intron
ENSMUST00000135172 (Smc1a-003) 152036447-152038058 retained_intron
ENSMUST00000141457 (Smc1a-005) 152059075-152059780 retained_intron
ENSMUST00000145518 (Smc1a-002) 152016428-152036212 nonsense_mediated_decay
ENSMUSG00000083474 (Gm15267)
predicted gene 15267 		ENSMUST00000120888 (Gm15267-001) 152043049-152043512 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001B1_0001ENSDARG00000055739ENSDART00000078141ENSDARG00000055754ENSDART00000078148CIL_0001B1_0002ENSMUSG00000025257ENSMUST00000026288ENSMUST00000133517ENSMUSG00000041133ENSMUST00000045312ENSMUST00000124681ENSMUST00000131395ENSMUST00000135172ENSMUST00000141457ENSMUST00000145518ENSMUSG00000083474ENSMUST00000120888
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001B1_0001ENSDARG00000055739ENSDART00000078141ENSDARG00000055754ENSDART00000078148CIL_0001B1_0002ENSMUSG00000025257ENSMUST00000026288ENSMUSG00000041133ENSMUST00000045312ENSMUST00000145518ENSMUSG00000083474ENSMUST00000120888
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055739 ENSDART00000078141 N/A N/A N/A N/A N/A N/A 0.067±0.03 0.221±0.03 N/A N/A 0.167±0.00 N/A N/A N/A
ENSDARG00000055754 ENSDART00000078148 N/A N/A N/A 11.632±0.00 N/A N/A 0.080±0.02 0.169±0.00 N/A N/A 0.250±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025257 ENSMUST00000026288 0.170±0.04 0.288±0.18 0.378±0.10 0.317±0.04 0.265±0.09 0.484±0.16 0.054±0.03 0.400±0.13 0.518±0.35 0.386±0.18 0.145±0.03 1.093±0.80 1.198±0.76 14.604±5.64
ENSMUST00000133517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041133 ENSMUST00000045312 9.165±2.34 4.413±0.55 7.266±0.02 15.461±3.75 8.169±1.51 5.245±0.41 4.444±0.60 5.912±0.28 13.930±10.74 9.954±1.73 2.608±0.33 13.272±7.22 14.598±8.18 1.008±0.23
ENSMUST00000124681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 73.414±0.00 13.344±0.00
ENSMUSG00000083474 ENSMUST00000120888 0.162±0.00 N/A 0.114±0.00 0.071±0.03 0.506±0.00 N/A 0.106±0.00 N/A 0.122±0.08 N/A N/A 0.263±0.00 0.156±0.12 0.155±0.04

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