C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001EL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063311-ENSDARG00000088571 CGP 7955 16:6440245-6487240
GeneTranscriptPositionBiotype
ENSDARG00000088571 (soga3a)
SOGA family member 3a
ENSDART00000145368 (soga3a-001) 6457885-6487240 protein_coding
ENSDARG00000097245 (soga3a)
SOGA family member 3a
ENSDART00000092402 (soga3a-201) 6443654-6455176 protein_coding
ENSDART00000130374 (soga3a-202) 6472170-6480417 protein_coding
ENSDART00000156765 (soga3a-001) 6440245-6487240 nonsense_mediated_decay
CIL_0001EL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000255330-ENSG00000255330 CGP 9606 6:127438406-127519355
GeneTranscriptPositionBiotype
ENSG00000189367 (KIAA0408)
KIAA0408
ENST00000368281 (KIAA0408-001) 127440343-127451216 retained_intron
ENST00000465254 (KIAA0408-002) 127441048-127447085 protein_coding
ENST00000472335 (KIAA0408-005) 127450046-127454242 retained_intron
ENST00000483725 (KIAA0408-003) 127443247-127459391 protein_coding
ENST00000487331 (KIAA0408-004) 127447598-127459365 protein_coding
ENSG00000214338 (SOGA3)
SOGA family member 3
ENST00000465909 (SOGA3-003) 127472806-127518891 protein_coding
ENST00000467753 (SOGA3-002) 127516584-127518920 protein_coding
ENST00000525778 (SOGA3-001) 127472794-127519191 protein_coding
CIL_0001EL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038916-ENSMUSG00000004360 CGP 10090 10:29143996-29230779
GeneTranscriptPositionBiotype
ENSMUSG00000004360 (9330159F19Rik)
RIKEN cDNA 9330159F19 gene
ENSMUST00000092627 (9330159F19Rik-201) 29211643-29230779 protein_coding
ENSMUSG00000038916 (Soga3)
SOGA family member 3
ENSMUST00000092629 (Soga3-201) 29143996-29199630 protein_coding
ENSMUSG00000056316 (Gm9996)
predicted gene 9996
ENSMUST00000070359 (Gm9996-201) 29143282-29144194 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001EL_0001ENSDARG00000088571ENSDART00000145368ENSDARG00000097245ENSDART00000092402ENSDART00000130374ENSDART00000156765CIL_0001EL_0002ENSG00000189367ENST00000368281ENST00000465254ENST00000472335ENST00000483725ENST00000487331ENSG00000214338ENST00000465909ENST00000467753ENST00000525778CIL_0001EL_0003ENSMUSG00000004360ENSMUST00000092627ENSMUSG00000038916ENSMUST00000092629ENSMUSG00000056316ENSMUST00000070359
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001EL_0001ENSDARG00000088571ENSDART00000145368ENSDARG00000097245ENSDART00000092402ENSDART00000130374ENSDART00000156765CIL_0001EL_0002ENSG00000189367ENST00000368281ENST00000465254ENST00000472335ENST00000483725ENST00000487331ENSG00000214338ENST00000465909ENST00000467753ENST00000525778CIL_0001EL_0003ENSMUSG00000004360ENSMUST00000092627ENSMUSG00000038916ENSMUST00000092629ENSMUSG00000056316ENSMUST00000070359
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000088571 ENSDART00000145368 N/A N/A N/A 4.277±1.03 N/A N/A 2.287±0.00 1.017±0.30 0.053±0.00 N/A 4.290±0.00 N/A N/A N/A
ENSDARG00000097245 ENSDART00000092402 N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A
ENSDART00000130374 N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156765 N/A N/A N/A 5.230±1.73 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000189367 ENST00000368281 0.205±0.00 N/A N/A N/A 0.434±0.00 N/A 0.067±0.00 0.068±0.00 N/A N/A N/A 0.348±0.00 0.055±0.00 N/A
ENST00000465254 0.573±0.00 N/A 0.193±0.00 9.136±1.13 2.267±0.00 2.225±1.09 0.197±0.10 N/A 5.265±0.00 2.152±1.45 2.176±0.00 0.172±0.09 0.109±0.05 N/A
ENST00000472335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.004±0.00
ENST00000483725 0.751±0.00 0.155±0.00 0.045±0.00 N/A 1.683±1.07 1.219±0.00 0.286±0.09 0.125±0.00 6.696±0.00 2.354±1.74 2.458±0.45 0.347±0.05 0.091±0.00 1.350±0.00
ENST00000487331 N/A 0.408±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214338 ENST00000465909 N/A N/A 0.215±0.00 3.426±0.00 N/A N/A N/A N/A N/A 1.422±0.00 N/A 0.220±0.00 N/A N/A
ENST00000467753 N/A N/A N/A N/A N/A N/A N/A 0.908±0.00 N/A N/A N/A N/A N/A N/A
ENST00000525778 N/A N/A N/A 4.948±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.06 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004360 ENSMUST00000092627 0.510±0.11 0.258±0.10 1.658±0.15 12.038±7.48 0.372±0.17 0.159±0.07 0.099±0.07 0.052±0.02 0.017±0.01 0.447±0.16 2.764±1.07 0.150±0.06 0.014±0.01 0.064±0.04
ENSMUSG00000038916 ENSMUST00000092629 0.017±0.01 0.945±0.30 0.122±0.01 27.618±4.25 0.018±0.01 0.411±0.06 0.021±0.02 0.039±0.01 0.033±0.03 0.022±0.00 0.011±0.00 0.029±0.01 0.076±0.09 0.051±0.03
ENSMUSG00000056316 ENSMUST00000070359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 0.046±0.00

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