C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001GE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070159-ENSG00000243444 CGP 9606 9:109375466-109946703
GeneTranscriptPositionBiotype
ENSG00000213539 (YBX1P6)
Y box binding protein 1 pseudogene 6 		ENST00000442962 (YBX1P6-001) 109532830-109534332 processed_pseudogene
ENSG00000232939 (RP11-406O23.2)
 ENST00000449258 (RP11-406O23.2-001) 109760360-109772043 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001GE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038764-ENSMUSG00000090053 CGP 10090 4:57190841-57712016
GeneTranscriptPositionBiotype
ENSMUSG00000038764 (Ptpn3)
protein tyrosine phosphatase, non-receptor type 3 		ENSMUST00000075637 (Ptpn3-001) 57190841-57301837 protein_coding
ENSMUST00000123664 (Ptpn3-004) 57218347-57222054 processed_transcript
ENSMUST00000130900 (Ptpn3-002) 57265058-57301507 protein_coding
ENSMUST00000150445 (Ptpn3-006) 57254917-57300915 processed_transcript
ENSMUST00000151964 (Ptpn3-005) 57270050-57300756 protein_coding
ENSMUST00000153926 (Ptpn3-003) 57245051-57300375 protein_coding
ENSMUSG00000081540 (Gm12538)
predicted gene 12538 		ENSMUST00000120064 (Gm12538-001) 57413711-57414196 processed_pseudogene
ENSMUSG00000081615 (Gm12539)
predicted gene 12539 		ENSMUST00000121549 (Gm12539-001) 57455561-57457549 processed_pseudogene
ENSMUSG00000089945 (Palm2Akap2)
Palm2-Akap2 readthrough transcript 		ENSMUST00000098066 (Palm2Akap2-002) 57568179-57896982 nonsense_mediated_decay
ENSMUST00000126465 (Palm2Akap2-003) 57568330-57854584 nonsense_mediated_decay
ENSMUST00000150412 (Palm2Akap2-001) 57637823-57894718 protein_coding
ENSMUSG00000095042 (Gm12537)
predicted gene 12537 		ENSMUST00000119266 (Gm12537-001) 57370953-57371954 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GE_0001ENSG00000213539ENST00000442962ENSG00000232939ENST00000449258CIL_0001GE_0002ENSMUSG00000038764ENSMUST00000075637ENSMUST00000123664ENSMUST00000130900ENSMUST00000150445ENSMUST00000151964ENSMUST00000153926ENSMUSG00000081540ENSMUST00000120064ENSMUSG00000081615ENSMUST00000121549ENSMUSG00000089945ENSMUST00000098066ENSMUST00000126465ENSMUST00000150412ENSMUSG00000095042ENSMUST00000119266
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GE_0001ENSG00000213539ENST00000442962ENSG00000232939ENST00000449258CIL_0001GE_0002ENSMUSG00000038764ENSMUST00000075637ENSMUSG00000081540ENSMUST00000120064ENSMUSG00000081615ENSMUST00000121549ENSMUSG00000089945ENSMUST00000098066ENSMUST00000150412ENSMUSG00000095042ENSMUST00000119266
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000213539 ENST00000442962 0.018±0.00 0.078±0.00 N/A N/A 0.044±0.02 0.019±0.00 0.019±0.00 0.021±0.00 N/A N/A 0.143±0.00 0.036±0.01 0.160±0.10 0.088±0.00
ENSG00000232939 ENST00000449258 N/A 0.124±0.00 N/A N/A N/A 0.099±0.00 0.021±0.00 N/A N/A N/A N/A 0.058±0.00 0.030±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038764 ENSMUST00000075637 0.687±0.19 N/A 2.647±0.00 0.206±0.00 1.154±0.00 3.774±1.43 1.602±0.58 1.618±0.33 1.040±0.58 0.957±0.45 N/A 1.075±0.55 0.710±0.21 N/A
ENSMUST00000123664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081540 ENSMUST00000120064 0.305±0.00 0.292±0.00 0.113±0.00 0.240±0.10 0.133±0.07 0.130±0.00 0.117±0.03 0.125±0.03 0.327±0.14 N/A N/A 0.258±0.00 N/A 0.096±0.03
ENSMUSG00000081615 ENSMUST00000121549 N/A 0.130±0.00 N/A 0.107±0.03 N/A N/A 0.094±0.04 N/A N/A 0.175±0.08 N/A 0.173±0.14 0.020±0.01 N/A
ENSMUSG00000089945 ENSMUST00000098066 N/A N/A N/A N/A 2.969±0.60 N/A 3.057±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150412 N/A N/A N/A 12.891±0.00 N/A N/A N/A N/A N/A N/A N/A 11.541±0.00 20.423±1.71 2.209±0.50
ENSMUSG00000095042 ENSMUST00000119266 0.174±0.04 0.175±0.10 0.194±0.03 14.850±14.84 0.384±0.22 0.146±0.07 0.360±0.22 0.160±0.08 4.963±15.36 0.046±0.01 0.222±0.12 0.137±0.07 0.092±0.03 0.031±0.00

Loading