C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001GE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070159-ENSG00000243444 CGP 9606 9:109375466-109946703
GeneTranscriptPositionBiotype
ENSG00000213539 (YBX1P6)
Y box binding protein 1 pseudogene 6 		ENST00000442962 (YBX1P6-001) 109532830-109534332 processed_pseudogene
ENSG00000232939 (RP11-406O23.2)
 ENST00000449258 (RP11-406O23.2-001) 109760360-109772043 antisense
CIL_0001GE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038764-ENSMUSG00000090053 CGP 10090 4:57190841-57712016
GeneTranscriptPositionBiotype
ENSMUSG00000038764 (Ptpn3)
protein tyrosine phosphatase, non-receptor type 3 		ENSMUST00000075637 (Ptpn3-001) 57190841-57301837 protein_coding
ENSMUST00000123664 (Ptpn3-004) 57218347-57222054 processed_transcript
ENSMUST00000130900 (Ptpn3-002) 57265058-57301507 protein_coding
ENSMUST00000150445 (Ptpn3-006) 57254917-57300915 processed_transcript
ENSMUST00000151964 (Ptpn3-005) 57270050-57300756 protein_coding
ENSMUST00000153926 (Ptpn3-003) 57245051-57300375 protein_coding
ENSMUSG00000081540 (Gm12538)
predicted gene 12538 		ENSMUST00000120064 (Gm12538-001) 57413711-57414196 processed_pseudogene
ENSMUSG00000081615 (Gm12539)
predicted gene 12539 		ENSMUST00000121549 (Gm12539-001) 57455561-57457549 processed_pseudogene
ENSMUSG00000089945 (Palm2Akap2)
Palm2-Akap2 readthrough transcript 		ENSMUST00000098066 (Palm2Akap2-002) 57568179-57896982 nonsense_mediated_decay
ENSMUST00000126465 (Palm2Akap2-003) 57568330-57854584 nonsense_mediated_decay
ENSMUST00000150412 (Palm2Akap2-001) 57637823-57894718 protein_coding
ENSMUSG00000095042 (Gm12537)
predicted gene 12537 		ENSMUST00000119266 (Gm12537-001) 57370953-57371954 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GE_0001ENSG00000213539ENST00000442962ENSG00000232939ENST00000449258CIL_0001GE_0002ENSMUSG00000038764ENSMUST00000075637ENSMUST00000123664ENSMUST00000130900ENSMUST00000150445ENSMUST00000151964ENSMUST00000153926ENSMUSG00000081540ENSMUST00000120064ENSMUSG00000081615ENSMUST00000121549ENSMUSG00000089945ENSMUST00000098066ENSMUST00000126465ENSMUST00000150412ENSMUSG00000095042ENSMUST00000119266
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GE_0001ENSG00000213539ENST00000442962ENSG00000232939ENST00000449258CIL_0001GE_0002ENSMUSG00000038764ENSMUST00000075637ENSMUSG00000081540ENSMUST00000120064ENSMUSG00000081615ENSMUST00000121549ENSMUSG00000089945ENSMUST00000098066ENSMUST00000150412ENSMUSG00000095042ENSMUST00000119266
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000213539 ENST00000442962 0.018±0.00 0.078±0.00 N/A N/A 0.044±0.02 0.019±0.00 0.019±0.00 0.021±0.00 N/A N/A 0.143±0.00 0.036±0.01 0.160±0.10 0.088±0.00
ENSG00000232939 ENST00000449258 N/A 0.124±0.00 N/A N/A N/A 0.099±0.00 0.021±0.00 N/A N/A N/A N/A 0.058±0.00 0.030±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038764 ENSMUST00000075637 0.687±0.19 N/A 2.647±0.00 0.206±0.00 1.154±0.00 3.774±1.43 1.602±0.58 1.618±0.33 1.040±0.58 0.957±0.45 N/A 1.075±0.55 0.710±0.21 N/A
ENSMUST00000123664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081540 ENSMUST00000120064 0.305±0.00 0.292±0.00 0.113±0.00 0.240±0.10 0.133±0.07 0.130±0.00 0.117±0.03 0.125±0.03 0.327±0.14 N/A N/A 0.258±0.00 N/A 0.096±0.03
ENSMUSG00000081615 ENSMUST00000121549 N/A 0.130±0.00 N/A 0.107±0.03 N/A N/A 0.094±0.04 N/A N/A 0.175±0.08 N/A 0.173±0.14 0.020±0.01 N/A
ENSMUSG00000089945 ENSMUST00000098066 N/A N/A N/A N/A 2.969±0.60 N/A 3.057±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150412 N/A N/A N/A 12.891±0.00 N/A N/A N/A N/A N/A N/A N/A 11.541±0.00 20.423±1.71 2.209±0.50
ENSMUSG00000095042 ENSMUST00000119266 0.174±0.04 0.175±0.10 0.194±0.03 14.850±14.84 0.384±0.22 0.146±0.07 0.360±0.22 0.160±0.08 4.963±15.36 0.046±0.01 0.222±0.12 0.137±0.07 0.092±0.03 0.031±0.00

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