C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001H9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115935-ENSG00000138435 CGP 9606 2:174559572-174764472
GeneTranscriptPositionBiotype
ENSG00000115935 (WIPF1)
WAS/WASL interacting protein family, member 1 		ENST00000272746 (WIPF1-004) 174560770-174682899 protein_coding
ENST00000359761 (WIPF1-006) 174562204-174682883 protein_coding
ENST00000392546 (WIPF1-002) 174562211-174598206 protein_coding
ENST00000392547 (WIPF1-001) 174559572-174634579 protein_coding
ENST00000409415 (WIPF1-003) 174571169-174682871 protein_coding
ENST00000409891 (WIPF1-005) 174566161-174597765 protein_coding
ENST00000410117 (WIPF1-016) 174574730-174597769 protein_coding
ENST00000436221 (WIPF1-014) 174575263-174598211 protein_coding
ENST00000455428 (WIPF1-017) 174572324-174585589 protein_coding
ENST00000467149 (WIPF1-019) 174567077-174570646 processed_transcript
ENST00000469002 (WIPF1-018) 174673267-174682847 processed_transcript
ENST00000470752 (WIPF1-010) 174623481-174634605 processed_transcript
ENST00000474332 (WIPF1-013) 174625624-174630429 retained_intron
ENST00000480400 (WIPF1-015) 174581140-174597804 retained_intron
ENST00000487291 (WIPF1-009) 174676337-174682916 processed_transcript
ENST00000488830 (WIPF1-012) 174625710-174634536 retained_intron
ENST00000490887 (WIPF1-011) 174625857-174634579 processed_transcript
ENST00000610916 (WIPF1-201) 174566161-174597765 protein_coding
ENSG00000138435 (CHRNA1)
cholinergic receptor, nicotinic, alpha 1 (muscle) 		ENST00000261007 (CHRNA1-002) 174747660-174764461 protein_coding
ENST00000348749 (CHRNA1-001) 174747592-174764472 protein_coding
ENST00000409219 (CHRNA1-005) 174747810-174764412 protein_coding
ENST00000409323 (CHRNA1-004) 174752755-174764453 protein_coding
ENST00000409542 (CHRNA1-003) 174747810-174764412 protein_coding
ENST00000435083 (CHRNA1-006) 174747810-174764412 nonsense_mediated_decay
ENSG00000235655 (H3F3AP4)
H3 histone, family 3A, pseudogene 4 		ENST00000369387 (H3F3AP4-001) 174719908-174720318 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001H9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075284-ENSMUSG00000027107 CGP 10090 2:73429610-73580338
GeneTranscriptPositionBiotype
ENSMUSG00000027107 (Chrna1)
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 		ENSMUST00000028515 (Chrna1-001) 73563215-73580338 protein_coding
ENSMUSG00000075284 (Wipf1)
WAS/WASL interacting protein family, member 1 		ENSMUST00000094681 (Wipf1-001) 73429610-73529734 protein_coding
ENSMUST00000102679 (Wipf1-003) 73432147-73453979 protein_coding
ENSMUST00000102680 (Wipf1-002) 73430039-73485763 protein_coding
ENSMUST00000129594 (Wipf1-005) 73447932-73529382 processed_transcript
ENSMUST00000141264 (Wipf1-006) 73437464-73486469 protein_coding
ENSMUST00000143061 (Wipf1-004) 73444512-73529479 processed_transcript
ENSMUST00000151939 (Wipf1-007) 73444452-73452710 protein_coding
ENSMUSG00000086069 (Gm13708)
predicted gene 13708 		ENSMUST00000145170 (Gm13708-001) 73459705-73477602 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001H9_0001ENSG00000115935ENST00000272746ENST00000359761ENST00000392546ENST00000392547ENST00000409415ENST00000409891ENST00000410117ENST00000436221ENST00000455428ENST00000467149ENST00000469002ENST00000470752ENST00000474332ENST00000480400ENST00000487291ENST00000488830ENST00000490887ENST00000610916ENSG00000138435ENST00000261007ENST00000348749ENST00000409219ENST00000409323ENST00000409542ENST00000435083ENSG00000235655ENST00000369387CIL_0001H9_0002ENSMUSG00000027107ENSMUST00000028515ENSMUSG00000075284ENSMUST00000094681ENSMUST00000102679ENSMUST00000102680ENSMUST00000129594ENSMUST00000141264ENSMUST00000143061ENSMUST00000151939ENSMUSG00000086069ENSMUST00000145170
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001H9_0001ENSG00000115935ENST00000272746ENST00000359761ENST00000392547ENST00000409415ENSG00000138435ENST00000261007ENST00000348749ENST00000409219ENST00000409323ENST00000409542ENST00000435083ENSG00000235655ENST00000369387CIL_0001H9_0002ENSMUSG00000027107ENSMUST00000028515ENSMUSG00000075284ENSMUST00000094681ENSMUST00000102679ENSMUST00000102680ENSMUSG00000086069ENSMUST00000145170
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115935 ENST00000272746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.850±0.00 1.139±0.00 2.922±0.00 N/A
ENST00000359761 N/A N/A N/A N/A N/A N/A 0.536±0.00 N/A N/A 31.243±0.00 N/A N/A N/A N/A
ENST00000392546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392547 16.595±0.00 18.312±0.00 N/A 6.561±5.84 9.064±0.00 17.311±0.00 0.301±0.00 3.755±2.99 1.987±0.86 3.820±0.00 1.729±0.00 2.973±2.73 6.188±0.27 5.010±3.70
ENST00000409415 N/A N/A 1.394±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138435 ENST00000261007 N/A N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A 4.600±3.85 N/A N/A N/A
ENST00000348749 0.209±0.00 N/A N/A 0.485±0.00 0.542±0.18 0.253±0.00 0.220±0.00 N/A N/A 0.501±0.00 22.302±19.83 0.168±0.03 0.221±0.05 1.659±0.00
ENST00000409219 N/A 0.001±0.00 N/A 0.123±0.06 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409323 N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 0.035±0.00 N/A
ENST00000409542 N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 21.542±0.00 0.177±0.00 0.106±0.00 0.596±0.51
ENST00000435083 0.253±0.00 N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A N/A N/A 0.047±0.00 0.086±0.02 N/A
ENSG00000235655 ENST00000369387 N/A N/A 0.826±0.00 0.775±0.00 2.156±0.00 1.507±0.00 0.783±0.00 1.793±0.00 1.709±0.00 0.631±0.00 N/A 1.295±0.79 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027107 ENSMUST00000028515 0.044±0.04 0.035±0.00 0.027±0.00 0.094±0.04 0.465±0.42 0.068±0.02 0.033±0.01 0.021±0.01 0.052±0.06 0.148±0.10 2.488±0.27 0.079±0.05 0.169±0.18 N/A
ENSMUSG00000075284 ENSMUST00000094681 1.016±0.46 0.960±0.33 3.787±0.54 0.632±0.07 1.731±0.45 0.884±0.18 0.837±0.52 0.917±0.40 0.603±0.27 1.671±0.15 1.361±0.61 0.719±0.28 2.470±1.61 0.114±0.05
ENSMUST00000102679 1.109±0.00 2.343±0.27 N/A N/A 6.499±2.93 1.887±0.92 0.475±0.00 0.648±0.15 0.219±0.09 2.342±0.60 N/A 1.390±0.50 5.769±0.00 N/A
ENSMUST00000102680 1.510±0.84 1.229±0.75 N/A 0.612±0.41 5.612±2.64 1.696±0.20 0.548±0.08 0.914±0.39 0.467±0.20 4.301±0.31 0.488±0.00 1.324±0.82 3.973±2.74 0.120±0.04
ENSMUST00000129594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086069 ENSMUST00000145170 0.169±0.02 N/A N/A 0.035±0.00 0.726±0.11 N/A 0.137±0.00 N/A 0.167±0.05 N/A N/A N/A N/A 0.399±0.25

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