C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001J1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101311-ENSG00000125845 CGP 9606 20:6074845-6780280
GeneTranscriptPositionBiotype
ENSG00000101311 (FERMT1)
fermitin family member 1 		ENST00000217289 (FERMT1-001) 6074845-6123544 protein_coding
ENST00000378844 (FERMT1-004) 6112569-6120492 protein_coding
ENST00000478194 (FERMT1-002) 6074845-6094172 processed_transcript
ENST00000536936 (FERMT1-201) 6076022-6123030 protein_coding
ENSG00000125845 (BMP2)
bone morphogenetic protein 2 		ENST00000378827 (BMP2-001) 6767664-6780280 protein_coding
ENSG00000228482 (RP5-859D4.3)
 ENST00000445589 (RP5-859D4.3-001) 6731258-6736136 lincRNA
ENSG00000229876 (CASC20)
cancer susceptibility candidate 20 (non-protein coding) 		ENST00000415932 (CASC20-001) 6446723-6528459 lincRNA
ENSG00000233402 (TARDBPP1)
TAR DNA binding protein pseudogene 1 		ENST00000442013 (TARDBPP1-001) 6200989-6202191 processed_pseudogene
ENSG00000234241 (RP4-775C13.1)
 ENST00000434910 (RP4-775C13.1-001) 6213699-6215381 processed_pseudogene
ENSG00000271565 (RP4-775C13.2)
 ENST00000605527 (RP4-775C13.2-001) 6219199-6219443 processed_pseudogene
ENSG00000276915 (RP4-775C13.3)
 ENST00000622748 (RP4-775C13.3-001) 6220330-6220759 processed_pseudogene
CIL_0001J1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027356-ENSMUSG00000027358 CGP 10090 2:132904389-133562885
GeneTranscriptPositionBiotype
ENSMUSG00000027356 (Fermt1)
fermitin family homolog 1 (Drosophila) 		ENSMUST00000038280 (Fermt1-001) 132904389-132945906 protein_coding
ENSMUST00000134937 (Fermt1-002) 132904389-132945629 retained_intron
ENSMUST00000143981 (Fermt1-004) 132939096-132941963 processed_transcript
ENSMUST00000144342 (Fermt1-003) 132936113-132942097 processed_transcript
ENSMUSG00000027358 (Bmp2)
bone morphogenetic protein 2 		ENSMUST00000028836 (Bmp2-001) 133552159-133562885 protein_coding
ENSMUSG00000082940 (Gm14103)
predicted gene 14103 		ENSMUST00000119075 (Gm14103-001) 133047187-133047552 processed_pseudogene
ENSMUSG00000083689 (Gm14094)
predicted gene 14094 		ENSMUST00000117717 (Gm14094-001) 133199611-133200220 processed_pseudogene
ENSMUSG00000084393 (Gm14101)
predicted gene 14101 		ENSMUST00000121502 (Gm14101-001) 132980169-132981168 processed_pseudogene
ENSMUSG00000086478 (Gm14102)
predicted gene 14102 		ENSMUST00000147678 (Gm14102-001) 132958442-132959805 lincRNA
ENSMUSG00000086650 (A430048G15Rik)
RIKEN cDNA A430048G15 gene 		ENSMUST00000149965 (A430048G15Rik-001) 133432095-133453362 lincRNA
ENSMUSG00000087585 (Gm14100)
predicted gene 14100 		ENSMUST00000125575 (Gm14100-001) 133463118-133465784 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001J1_0001ENSG00000101311ENST00000217289ENST00000378844ENST00000478194ENST00000536936ENSG00000125845ENST00000378827ENSG00000228482ENST00000445589ENSG00000229876ENST00000415932ENSG00000233402ENST00000442013ENSG00000234241ENST00000434910ENSG00000271565ENST00000605527ENSG00000276915ENST00000622748CIL_0001J1_0002ENSMUSG00000027356ENSMUST00000038280ENSMUST00000134937ENSMUST00000143981ENSMUST00000144342ENSMUSG00000027358ENSMUST00000028836ENSMUSG00000082940ENSMUST00000119075ENSMUSG00000083689ENSMUST00000117717ENSMUSG00000084393ENSMUST00000121502ENSMUSG00000086478ENSMUST00000147678ENSMUSG00000086650ENSMUST00000149965ENSMUSG00000087585ENSMUST00000125575
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001J1_0001ENSG00000101311ENST00000217289ENST00000378844ENST00000478194ENST00000536936ENSG00000125845ENST00000378827ENSG00000228482ENST00000445589ENSG00000229876ENST00000415932ENSG00000233402ENST00000442013ENSG00000234241ENST00000434910ENSG00000271565ENST00000605527ENSG00000276915ENST00000622748CIL_0001J1_0002ENSMUSG00000027356ENSMUST00000038280ENSMUST00000134937ENSMUST00000143981ENSMUST00000144342ENSMUSG00000027358ENSMUST00000028836ENSMUSG00000082940ENSMUST00000119075ENSMUSG00000083689ENSMUST00000117717ENSMUSG00000084393ENSMUST00000121502ENSMUSG00000086478ENSMUST00000147678ENSMUSG00000086650ENSMUST00000149965ENSMUSG00000087585ENSMUST00000125575
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101311 ENST00000217289 0.093±0.00 N/A 0.080±0.00 0.037±0.00 1.839±0.00 1.466±0.00 0.046±0.00 N/A N/A N/A N/A 4.718±3.57 0.799±0.32 N/A
ENST00000378844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.243±0.00
ENST00000478194 N/A 0.062±0.00 N/A N/A N/A 1.258±0.00 N/A 0.127±0.04 0.056±0.00 0.269±0.01 0.040±0.00 2.401±2.06 0.811±0.00 0.261±0.12
ENST00000536936 N/A N/A 0.177±0.00 0.158±0.09 2.170±0.00 N/A 0.025±0.00 N/A N/A N/A N/A 4.550±0.00 1.479±0.00 0.022±0.00
ENSG00000125845 ENST00000378827 2.590±0.00 2.378±0.00 0.347±0.00 1.437±0.93 2.784±1.97 2.353±0.10 0.655±0.38 1.654±1.15 1.289±0.29 5.451±3.77 0.516±0.07 0.826±0.51 7.120±5.13 0.909±0.57
ENSG00000228482 ENST00000445589 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.16
ENSG00000229876 ENST00000415932 0.035±0.00 0.031±0.00 N/A 0.016±0.00 0.014±0.00 N/A N/A N/A 0.004±0.00 0.015±0.00 0.005±0.00 0.004±0.00 0.042±0.02 0.055±0.00
ENSG00000233402 ENST00000442013 N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234241 ENST00000434910 0.007±0.00 0.034±0.00 N/A 0.014±0.00 0.026±0.00 0.024±0.00 N/A 0.007±0.00 N/A 0.043±0.00 0.024±0.00 0.011±0.00 0.025±0.00 0.273±0.22
ENSG00000271565 ENST00000605527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00
ENSG00000276915 ENST00000622748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027356 ENSMUST00000038280 2.572±2.56 N/A 1.546±0.28 0.098±0.04 1.130±0.05 15.308±2.96 0.009±0.00 6.247±0.99 0.090±0.11 0.337±0.09 0.015±0.01 1.929±0.56 0.215±0.11 0.047±0.02
ENSMUST00000134937 0.632±0.00 0.039±0.02 0.632±0.12 N/A 0.527±0.00 N/A N/A N/A 0.061±0.08 0.314±0.00 N/A 1.210±0.73 0.061±0.01 0.013±0.01
ENSMUST00000143981 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.246±0.00 0.426±0.00
ENSMUSG00000027358 ENSMUST00000028836 1.554±0.41 8.862±1.21 11.354±1.13 0.404±0.13 2.074±0.90 21.030±3.20 0.382±0.13 0.970±0.28 1.804±0.61 2.509±0.34 0.344±0.08 9.596±3.79 0.658±0.28 0.053±0.03
ENSMUSG00000082940 ENSMUST00000119075 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083689 ENSMUST00000117717 0.323±0.00 0.212±0.01 N/A N/A N/A 2.423±2.23 0.225±0.08 0.091±0.00 N/A 0.123±0.02 N/A 0.969±0.00 N/A 0.112±0.03
ENSMUSG00000084393 ENSMUST00000121502 N/A N/A 0.047±0.00 N/A N/A N/A N/A 0.213±0.10 N/A N/A N/A 0.098±0.00 N/A N/A
ENSMUSG00000086478 ENSMUST00000147678 N/A N/A 0.190±0.00 0.095±0.00 N/A N/A N/A 0.211±0.08 0.031±0.00 0.136±0.00 N/A 0.153±0.08 0.204±0.17 0.094±0.02
ENSMUSG00000086650 ENSMUST00000149965 N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087585 ENSMUST00000125575 N/A N/A 0.485±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A 0.063±0.00 N/A N/A

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