C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001J6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136718-ENSG00000072135 CGP 9606 2:130342225-130375409
GeneTranscriptPositionBiotype
ENSG00000072135 (PTPN18)
protein tyrosine phosphatase, non-receptor type 18 (brain-derived) 		ENST00000175756 (PTPN18-001) 130356007-130375409 protein_coding
ENST00000347849 (PTPN18-002) 130356045-130374571 protein_coding
ENST00000409022 (PTPN18-003) 130370089-130374866 protein_coding
ENST00000420717 (PTPN18-013) 130358864-130362430 processed_transcript
ENST00000428843 (PTPN18-006) 130356066-130370188 nonsense_mediated_decay
ENST00000460992 (PTPN18-008) 130359177-130359661 retained_intron
ENST00000462321 (PTPN18-004) 130372608-130374533 retained_intron
ENST00000462996 (PTPN18-011) 130370310-130372444 retained_intron
ENST00000464576 (PTPN18-015) 130370433-130370917 retained_intron
ENST00000479295 (PTPN18-014) 130358950-130359921 retained_intron
ENST00000481492 (PTPN18-012) 130371998-130373989 retained_intron
ENST00000483617 (PTPN18-007) 130358893-130370427 retained_intron
ENST00000489215 (PTPN18-005) 130356055-130370229 retained_intron
ENST00000490137 (PTPN18-016) 130370669-130371313 retained_intron
ENST00000490812 (PTPN18-010) 130370128-130372453 retained_intron
ENST00000495400 (PTPN18-009) 130368897-130370597 retained_intron
ENSG00000136710 (CCDC115)
coiled-coil domain containing 115 		ENST00000259229 (CCDC115-001) 130338241-130342349 protein_coding
ENST00000409127 (CCDC115-005) 130338496-130342324 protein_coding
ENST00000442217 (CCDC115-002) 130338243-130342349 nonsense_mediated_decay
ENST00000465315 (CCDC115-004) 130338247-130342135 retained_intron
ENSG00000136718 (IMP4)
IMP4, U3 small nucleolar ribonucleoprotein 		ENST00000259239 (IMP4-001) 130342225-130346624 protein_coding
ENST00000409649 (IMP4-010) 130342910-130346364 protein_coding
ENST00000409935 (IMP4-002) 130342877-130346519 protein_coding
ENST00000428740 (IMP4-012) 130342924-130346467 protein_coding
ENST00000452955 (IMP4-014) 130343270-130346549 protein_coding
ENST00000456713 (IMP4-013) 130342912-130345686 nonsense_mediated_decay
ENST00000460100 (IMP4-017) 130345633-130346622 retained_intron
ENST00000460766 (IMP4-004) 130342922-130347810 retained_intron
ENST00000462357 (IMP4-015) 130345642-130346341 retained_intron
ENST00000462392 (IMP4-003) 130342894-130347351 retained_intron
ENST00000464432 (IMP4-005) 130342894-130346411 retained_intron
ENST00000470672 (IMP4-007) 130342897-130344946 retained_intron
ENST00000473689 (IMP4-006) 130342896-130346272 retained_intron
ENST00000475074 (IMP4-016) 130345945-130346625 retained_intron
ENST00000477375 (IMP4-008) 130342897-130345761 retained_intron
ENST00000490895 (IMP4-009) 130342894-130346052 retained_intron
ENST00000495606 (IMP4-011) 130342918-130345020 retained_intron
CIL_0001J6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026127-ENSMUSG00000026126 CGP 10090 1:34439851-34475733
GeneTranscriptPositionBiotype
ENSMUSG00000026126 (Ptpn18)
protein tyrosine phosphatase, non-receptor type 18 		ENSMUST00000027302 (Ptpn18-002) 34459765-34473784 protein_coding
ENSMUST00000185610 (Ptpn18-006) 34459762-34461056 retained_intron
ENSMUST00000186252 (Ptpn18-007) 34463271-34466866 retained_intron
ENSMUST00000188019 (Ptpn18-008) 34474499-34475733 processed_transcript
ENSMUST00000188884 (Ptpn18-005) 34459792-34470324 retained_intron
ENSMUST00000188972 (Ptpn18-001) 34472736-34475733 protein_coding
ENSMUST00000190122 (Ptpn18-004) 34459777-34471917 protein_coding
ENSMUST00000191357 (Ptpn18-003) 34468834-34470434 retained_intron
ENSMUSG00000026127 (Imp4)
IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) 		ENSMUST00000027303 (Imp4-001) 34439851-34449356 protein_coding
ENSMUST00000128086 (Imp4-006) 34439953-34443455 processed_transcript
ENSMUST00000134327 (Imp4-005) 34439937-34444027 processed_transcript
ENSMUST00000136770 (Imp4-002) 34440041-34444514 nonsense_mediated_decay
ENSMUST00000137794 (Imp4-004) 34439905-34443856 nonsense_mediated_decay
ENSMUST00000149962 (Imp4-003) 34439905-34444387 retained_intron
ENSMUST00000187077 (Imp4-008) 34439898-34442569 retained_intron
ENSMUST00000191000 (Imp4-009) 34448247-34448938 processed_transcript
ENSMUSG00000100280 (RP24-554B1.10)
predicted gene 28417 		ENSMUST00000185218 (RP24-554B1.10-001) 34470155-34473148 antisense
ENSMUST00000185881 (RP24-554B1.10-002) 34471509-34473112 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001J6_0001ENSG00000072135ENST00000175756ENST00000347849ENST00000462321ENST00000479295ENST00000481492ENST00000483617ENST00000490812ENSG00000136710ENST00000259229ENST00000409127ENST00000442217ENSG00000136718ENST00000259239ENST00000409649ENST00000409935ENST00000428740ENST00000452955ENST00000460766ENST00000462392ENST00000464432ENST00000473689ENST00000475074CIL_0001J6_0002ENSMUSG00000026126ENSMUST00000027302ENSMUST00000186252ENSMUST00000188972ENSMUST00000190122ENSMUST00000191357ENSMUSG00000026127ENSMUST00000027303ENSMUST00000134327ENSMUST00000136770ENSMUSG00000100280ENSMUST00000185218ENSMUST00000185881
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072135 ENST00000175756 4.217±0.00 N/A N/A N/A 0.883±0.00 2.208±0.00 0.140±0.00 2.847±1.27 3.020±0.00 N/A N/A 4.825±3.20 6.682±1.03 1.824±0.00
ENST00000347849 N/A N/A N/A N/A N/A 2.420±0.00 N/A N/A N/A N/A 1.282±0.00 3.770±0.00 N/A N/A
ENST00000409022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462321 9.082±0.00 N/A N/A 1.797±0.00 1.234±0.00 2.254±0.00 N/A N/A N/A 1.500±0.00 N/A 1.062±0.00 N/A 1.391±0.00
ENST00000462996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479295 N/A N/A N/A N/A N/A N/A 0.754±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000481492 N/A N/A 3.810±0.00 3.969±0.00 2.811±0.00 4.730±0.00 0.396±0.00 1.372±0.00 2.445±0.00 1.790±0.00 1.124±0.00 13.595±11.85 14.487±0.00 4.992±0.00
ENST00000483617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.388±0.00 N/A N/A N/A
ENST00000489215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.658±0.00 N/A N/A N/A
ENST00000495400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136710 ENST00000259229 12.220±0.00 17.960±0.00 1.876±0.00 14.903±8.44 7.981±5.09 5.703±3.06 2.741±1.92 9.869±7.89 4.813±0.00 3.255±1.53 N/A 25.433±14.83 18.288±5.52 11.112±0.00
ENST00000409127 N/A 17.004±0.00 N/A N/A 14.248±0.00 12.141±0.00 N/A N/A N/A 11.918±0.00 N/A 18.808±0.00 7.367±0.00 8.234±1.53
ENST00000442217 N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A N/A 2.511±1.13 N/A 11.796±0.00 N/A 5.084±0.00
ENST00000465315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136718 ENST00000259239 N/A N/A N/A N/A N/A N/A 0.915±0.00 N/A 2.502±0.00 N/A N/A N/A N/A N/A
ENST00000409649 N/A N/A 3.615±0.00 N/A N/A N/A N/A 2.843±0.00 N/A N/A 16.001±0.00 N/A 23.014±0.00 N/A
ENST00000409935 15.333±0.00 N/A N/A N/A N/A N/A 14.587±0.00 N/A 20.929±0.00 14.598±0.00 18.411±0.00 N/A N/A N/A
ENST00000428740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.867±0.00 N/A N/A N/A
ENST00000452955 N/A N/A N/A N/A 3.574±0.00 N/A N/A 4.292±0.00 N/A N/A N/A 5.747±0.00 N/A N/A
ENST00000456713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460766 7.742±0.00 15.806±0.00 N/A 13.651±7.74 7.790±0.00 7.740±5.50 7.343±0.00 9.364±8.13 6.806±4.18 3.248±2.02 5.448±3.80 18.340±2.62 9.866±1.77 8.786±0.92
ENST00000462357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.296±0.00 N/A N/A N/A
ENST00000464432 15.265±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.498±0.00 N/A N/A N/A
ENST00000475074 N/A N/A N/A N/A N/A N/A N/A N/A 25.504±0.00 N/A 12.285±8.58 92.588±0.00 41.732±0.00 35.979±0.00
ENST00000477375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026126 ENSMUST00000027302 3.807±1.62 1.680±0.41 4.750±0.67 0.578±0.01 13.192±2.15 50.349±11.89 0.560±0.16 4.788±1.13 1.917±1.30 11.688±0.66 0.677±0.67 5.996±2.21 1.943±2.55 0.520±0.00
ENSMUST00000185610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186252 0.679±0.00 N/A N/A 0.095±0.00 1.137±0.00 N/A 0.167±0.02 1.015±0.25 N/A 2.179±0.12 0.078±0.03 0.302±0.13 0.067±0.05 0.016±0.00
ENSMUST00000188019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188972 17.999±2.36 5.350±2.90 12.269±0.00 4.455±1.13 78.551±28.64 N/A N/A N/A 9.104±8.78 23.901±2.00 1.218±0.28 18.899±3.56 3.126±0.76 N/A
ENSMUST00000190122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.696±0.00 N/A
ENSMUST00000191357 N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A 0.090±0.00 0.284±0.00 0.196±0.11 0.067±0.00
ENSMUSG00000026127 ENSMUST00000027303 7.805±1.31 8.777±0.68 4.373±0.32 4.342±2.35 7.396±1.67 7.187±0.95 3.131±0.49 6.820±1.29 5.873±1.39 8.212±1.01 1.354±0.26 10.635±3.69 4.881±2.15 3.387±1.46
ENSMUST00000128086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134327 18.211±0.00 21.169±1.41 N/A N/A 15.993±0.85 14.432±1.41 8.012±0.00 19.685±3.56 16.578±6.75 N/A N/A 23.958±2.22 26.245±3.52 N/A
ENSMUST00000136770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.167±8.18 3.962±0.00
ENSMUST00000137794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100280 ENSMUST00000185218 N/A 1.356±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.00 N/A N/A 0.244±0.00
ENSMUST00000185881 N/A 2.575±1.01 N/A N/A N/A N/A N/A N/A 0.861±0.26 N/A N/A 4.393±0.00 N/A 0.502±0.00

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