C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074737-ENSDARG00000028435 CGP 7955 18:47273864-47313692
GeneTranscriptPositionBiotype
ENSDARG00000028435 (aamdc)
adipogenesis associated, Mth938 domain containing 		ENSDART00000036499 (aamdc-001) 47297135-47304352 protein_coding
ENSDART00000151510 (aamdc-002) 47297740-47313692 protein_coding
ENSDARG00000063610 (INTS4)
integrator complex subunit 4 		ENSDART00000093103 (INTS4-201) 47303990-47336725 protein_coding
ENSDART00000151695 (INTS4-001) 47303989-47336779 protein_coding
ENSDARG00000074737 (RSF1 (2 of 3))
remodeling and spacing factor 1 		ENSDART00000112648 (RSF1 (2 of 3)-201) 47273922-47295061 protein_coding
ENSDART00000150987 (RSF1 (2 of 3)-001) 47273864-47284374 protein_coding
ENSDART00000151702 (RSF1 (2 of 3)-002) 47286079-47295117 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001JG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000048649-ENSG00000087884 CGP 9606 11:77659996-77918432
GeneTranscriptPositionBiotype
ENSG00000048649 (RSF1)
remodeling and spacing factor 1 		ENST00000308488 (RSF1-001) 77659996-77821017 protein_coding
ENST00000440064 (RSF1-004) 77725573-77820706 protein_coding
ENST00000467567 (RSF1-002) 77762050-77820869 retained_intron
ENST00000480887 (RSF1-003) 77666230-77703533 protein_coding
ENST00000526324 (RSF1-006) 77683769-77725680 protein_coding
ENST00000528095 (RSF1-005) 77701119-77820711 protein_coding
ENST00000529470 (RSF1-012) 77675079-77677061 retained_intron
ENST00000530604 (RSF1-008) 77813354-77820699 processed_transcript
ENST00000531026 (RSF1-007) 77675095-77698528 protein_coding
ENST00000531768 (RSF1-011) 77690966-77700761 retained_intron
ENST00000532556 (RSF1-010) 77693593-77700998 protein_coding
ENST00000534794 (RSF1-009) 77702401-77764690 processed_transcript
ENSG00000149262 (INTS4)
integrator complex subunit 4 		ENST00000433818 (INTS4-002) 77878720-77994671 nonsense_mediated_decay
ENST00000524766 (INTS4-006) 77981459-77994665 nonsense_mediated_decay
ENST00000525268 (INTS4-008) 77901453-77924861 processed_transcript
ENST00000525931 (INTS4-007) 77922353-77938771 processed_transcript
ENST00000527522 (INTS4-004) 77987016-77994670 protein_coding
ENST00000529807 (INTS4-003) 77924442-77994666 protein_coding
ENST00000531059 (INTS4-009) 77921351-77922805 retained_intron
ENST00000533180 (INTS4-010) 77901357-77921446 retained_intron
ENST00000534064 (INTS4-001) 77878720-77994678 protein_coding
ENST00000534408 (INTS4-005) 77977889-77994653 nonsense_mediated_decay
ENST00000535943 (INTS4-201) 77878722-77911154 protein_coding
ENSG00000206816 (Y_RNA)
Y RNA 		ENST00000384089 (Y_RNA.1-635) 77691650-77691751 misc_RNA
ENSG00000227376 (FTH1P16)
ferritin, heavy polypeptide 1 pseudogene 16 		ENST00000435241 (FTH1P16-001) 77734475-77735026 processed_pseudogene
ENSG00000241782 (RP11-91P24.1)
 ENST00000495378 (RP11-91P24.1-001) 77868722-77869195 processed_pseudogene
ENSG00000254459 (RP11-91P24.7)
 ENST00000525594 (RP11-91P24.7-001) 77829654-77872262 antisense
ENSG00000254691 (RP11-91P24.5)
 ENST00000527012 (RP11-91P24.5-001) 77850604-77851511 antisense
ENSG00000254985 (RSF1-IT2)
RSF1 intronic transcript 2 (non-protein coding) 		ENST00000529656 (RSF1-IT2-001) 77717712-77718411 sense_intronic
ENSG00000255115 (RP11-91P24.3)
 ENST00000532139 (RP11-91P24.3-001) 77914990-77915275 processed_pseudogene
ENSG00000255409 (RSF1-IT1)
RSF1 intronic transcript 1 (non-protein coding) 		ENST00000528233 (RSF1-IT1-001) 77738680-77739568 sense_intronic

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JG_0001ENSDARG00000028435ENSDART00000036499ENSDART00000151510ENSDARG00000063610ENSDART00000093103ENSDART00000151695ENSDARG00000074737ENSDART00000112648ENSDART00000150987ENSDART00000151702CIL_0001JG_0002ENSG00000048649ENST00000308488ENST00000440064ENST00000467567ENST00000480887ENST00000526324ENST00000528095ENST00000529470ENST00000530604ENST00000531026ENST00000531768ENST00000532556ENST00000534794ENSG00000149262ENST00000433818ENST00000524766ENST00000525268ENST00000525931ENST00000527522ENST00000529807ENST00000531059ENST00000533180ENST00000534064ENST00000534408ENST00000535943ENSG00000206816ENST00000384089ENSG00000227376ENST00000435241ENSG00000241782ENST00000495378ENSG00000254459ENST00000525594ENSG00000254691ENST00000527012ENSG00000254985ENST00000529656ENSG00000255115ENST00000532139ENSG00000255409ENST00000528233
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JG_0001ENSDARG00000028435ENSDART00000036499ENSDARG00000063610ENSDART00000093103ENSDART00000151695ENSDARG00000074737ENSDART00000112648ENSDART00000150987ENSDART00000151702CIL_0001JG_0002ENSG00000048649ENST00000308488ENST00000480887ENST00000526324ENST00000528095ENST00000531026ENSG00000149262ENST00000433818ENST00000529807ENST00000533180ENST00000534064ENST00000535943ENSG00000206816ENST00000384089ENSG00000227376ENST00000435241ENSG00000241782ENST00000495378ENSG00000254459ENST00000525594ENSG00000254691ENST00000527012ENSG00000254985ENST00000529656ENSG00000255115ENST00000532139ENSG00000255409ENST00000528233
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028435 ENSDART00000036499 N/A N/A N/A 5.469±0.33 N/A N/A 10.100±1.74 5.177±0.39 N/A N/A 13.723±0.00 N/A N/A N/A
ENSDART00000151510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000063610 ENSDART00000093103 N/A N/A N/A 2.859±0.00 N/A N/A 2.537±0.00 1.143±0.00 0.428±0.00 N/A 0.538±0.00 N/A N/A N/A
ENSDART00000151695 N/A N/A N/A 3.834±0.68 N/A N/A 2.536±1.25 1.525±0.19 0.311±0.00 N/A 1.503±0.00 N/A N/A N/A
ENSDARG00000074737 ENSDART00000112648 N/A N/A N/A 2.565±1.01 N/A N/A 0.156±0.06 N/A 0.036±0.00 N/A 0.313±0.00 N/A N/A N/A
ENSDART00000150987 N/A N/A N/A 1.052±0.00 N/A N/A 0.919±0.78 N/A 0.170±0.00 N/A N/A N/A N/A N/A
ENSDART00000151702 N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.00 N/A 0.311±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000048649 ENST00000308488 2.600±0.00 1.339±0.00 N/A 1.536±0.54 1.992±0.00 1.397±0.00 1.670±0.00 1.595±0.00 N/A 0.945±0.00 N/A 2.527±1.19 1.286±0.26 3.264±0.40
ENST00000440064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480887 1.568±0.00 N/A 1.367±0.00 N/A N/A 2.418±0.00 0.323±0.00 0.701±0.00 1.355±0.00 1.264±0.14 0.273±0.00 7.071±6.14 1.551±1.14 10.170±7.61
ENST00000526324 N/A N/A 1.420±0.00 3.382±0.41 2.314±0.00 2.894±0.00 1.502±0.87 1.522±0.00 2.613±0.00 2.411±0.31 0.305±0.00 2.570±0.00 10.098±0.00 N/A
ENST00000528095 N/A N/A 2.288±0.00 N/A 3.694±0.00 3.402±0.00 1.096±0.00 N/A 7.239±0.00 3.657±0.00 0.451±0.00 3.473±0.00 N/A N/A
ENST00000529470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531026 N/A N/A N/A N/A N/A N/A N/A 3.506±0.00 N/A N/A N/A N/A N/A N/A
ENST00000531768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000149262 ENST00000433818 N/A N/A 0.576±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.184±0.00 N/A N/A
ENST00000524766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529807 N/A N/A 1.158±0.00 N/A 2.447±0.00 2.023±0.00 N/A N/A 3.256±0.00 N/A N/A N/A N/A N/A
ENST00000531059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533180 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.797±0.00 N/A N/A N/A N/A
ENST00000534064 1.569±0.00 2.218±0.00 0.439±0.00 1.396±0.00 1.286±0.00 0.982±0.00 1.405±0.35 2.144±0.27 0.935±0.01 N/A 3.143±0.00 2.184±0.69 3.435±0.43 3.349±1.15
ENST00000534408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535943 4.123±0.00 7.031±0.00 N/A 3.111±0.00 N/A 6.075±0.00 N/A 2.701±1.39 3.135±0.00 3.582±1.85 4.410±0.00 6.507±0.74 3.831±0.12 5.976±0.00
ENSG00000206816 ENST00000384089 N/A 1.140±0.00 N/A N/A 0.725±0.00 0.848±0.00 N/A N/A N/A N/A N/A N/A 0.916±0.00 0.670±0.16
ENSG00000227376 ENST00000435241 1.096±0.00 0.756±0.00 0.217±0.00 0.621±0.55 0.943±0.27 0.881±0.07 0.246±0.20 1.080±0.20 0.722±0.37 1.753±0.28 0.830±0.26 0.507±0.19 0.396±0.06 0.694±0.12
ENSG00000241782 ENST00000495378 0.238±0.00 2.622±0.00 N/A 0.603±0.00 0.409±0.01 0.075±0.00 0.076±0.00 0.392±0.06 0.113±0.00 0.294±0.00 0.121±0.00 0.549±0.48 N/A 0.163±0.01
ENSG00000254459 ENST00000525594 N/A N/A N/A N/A N/A N/A 8.674±0.00 N/A N/A 9.236±0.00 N/A N/A N/A N/A
ENSG00000254691 ENST00000527012 0.108±0.00 1.217±0.00 N/A 0.220±0.00 0.399±0.28 0.029±0.00 0.094±0.00 0.155±0.00 0.081±0.00 0.012±0.00 0.014±0.00 0.215±0.08 N/A 0.502±0.35
ENSG00000254985 ENST00000529656 0.108±0.00 0.271±0.00 N/A 0.135±0.00 0.062±0.00 0.087±0.00 0.162±0.00 0.089±0.07 0.014±0.00 0.122±0.00 N/A 0.167±0.12 0.059±0.00 0.062±0.05
ENSG00000255115 ENST00000532139 0.084±0.00 0.044±0.00 N/A 0.252±0.00 N/A N/A 0.348±0.00 0.424±0.00 0.742±0.00 N/A N/A 0.548±0.00 0.075±0.00 0.297±0.00
ENSG00000255409 ENST00000528233 0.228±0.00 0.231±0.00 N/A 0.118±0.00 0.106±0.00 0.073±0.00 0.142±0.00 0.145±0.00 N/A 0.310±0.00 0.015±0.00 N/A 0.057±0.00 0.063±0.05

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